rqcCycleQualityBoxCalc {Rqc}R Documentation

Per cycle quality box plot

Description

Plots per cycle quality box plot.

Usage

rqcCycleQualityBoxCalc(rqcResultSet)

rqcCycleQualityBoxPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples


checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleQualityBoxPlot(rqcResultSet)
[Package Rqc version 1.16.2 Index]