Per cycle base calls plot

Description

Creates a bar graph of per cycle base calls.

Usage

rqcCycleBaseCallsCalc(rqcResultSet)

rqcCycleBaseCallsLinePlot(rqcResultSet)

rqcCycleBaseCallsPlot(rqcResultSet)

Arguments

Value

Plot object from ggplot function.

Functions

• rqcCycleBaseCallsCalc: calculates necessary statistics

• rqcCycleBaseCallsLinePlot: creates a line graph

Author(s)

Welliton Souza

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleBaseCallsPlot(rqcResultSet)