getAnnotatedDataFrameAssay {Risa}R Documentation

Retrieves an AnnotatedDataFrameAssay.

Description

Retrieves an AnnotatedDataFrameAssay.

Usage

getAnnotatedDataFrameAssay(isa, assay.filename)

Arguments

isa

An object of the ISAtab-class.

assay.filename

Value

An annotated data frame.

Author(s)

Alejandra Gonzalez-Beltran

See Also

ISATab-class, AnnotatedDataFrame

Examples

 faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
 faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE)
 faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]])
 str(faahkoADF)
 
 
 armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
 armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE)
 armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]])
 str(armstrongADF)
[Package Risa version 1.24.0 Index]