80857d043e3b55271cb91476386cd4c3 *CITATION
ab8da1e1e3034137cd5511bce8fac06e *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
9848080a934433ce69f7972f980d69aa *Meta/Rd.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
816570b91244a42be63bfff2695c6181 *Meta/hsearch.rds
55462fc0674c0e535a88395ef7ef2f93 *Meta/links.rds
2b8e834b9180f3196d2bb696ca15e13e *Meta/nsInfo.rds
793836665f44f1e2b4168897c5ae3ff7 *Meta/package.rds
bc894e369e9595738a486eed09120f7b *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
74c610b6cebf8492dfcb7d0c96c40a87 *R/Ringo.rdb
37dced4f594ebf1d904dd067567d5b55 *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
b0ca0a3fd382c469e917490ed1629cdb *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
689158213edc27968bf8918d7735965e *help/Ringo.rdb
ccfc6d3027955ac0fb608f84b75d6777 *help/Ringo.rdx
b027df02655697e42dbcdd9cfa66d048 *help/aliases.rds
f487e3a562489a50b7749490c4ec9199 *help/paths.rds
aa44ba541b74529fcbd2dbe01df9a3f5 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4ebf0c34e17ef11a906fdae426b085fe *html/Ringo-internal.html
2a83492099dce255867af7732ce2c2e5 *html/arrayImage.html
ef4ac96a255ab40616478feb5d2214ea *html/asExprSet.html
f2aabc3b39c829d652c03cdcc12a7d32 *html/autocorr.html
08d1f6007a46fc7017ca1ce6d19b1544 *html/cherByThreshold.html
65f247d46594deafe76ae74ea527f0ff *html/cherClass.html
37c543ad5afcf1bc5b77b1e7171b26f6 *html/chipAlongChrom.html
a90cd7275b65c5d5c45ccc3442d980e5 *html/chipAlongChromOld.html
82f832061cadef8e8b76dacebc0f3e1c *html/computeRunningMedians.html
ec685e12bcbe9f7b2568f13f04591248 *html/compute_gc.html
cd01f6009bd34f54d096620dedf1d216 *html/compute_sliding_t.html
b41b87d3e8abd9f2f64706246b81c893 *html/corrPlot.html
8191a63ab51732f61bb77c70940ba10b *html/exportCherList.html
682ee0aba12587985b864d7ada703924 *html/extractProbeAnno.html
fe6a868a0a921066a2992065e842b5a9 *html/features2Probes.html
e121e02f78a692f1e94d3afd0809ed99 *html/findChersOnSmoothed.html
c41a4dd83189b807a18e60899c35f67f *html/ftr2xys.html
b95a97a8f1d10df97b96a995a7af107f *html/getFeats.html
e815c7ef00e73702be1c8486f6e94c7e *html/newCER.html
512478c36b18305916c63fe5bd3dfb62 *html/nimblegenNorm.html
ded2c5ae758ef553cbef0112dc4e0f3c *html/nonzero.html
6167bad5d620b8fc26a6ff8fa21027ac *html/plotAutocorr.html
97560fd4024a2182bd3140c85326df05 *html/plotBM.html
74279d7ea75dfa1ec1122e4ef808319c *html/plot_cher.html
468c0a18fb00a9d46c5b6bbe32e8fb25 *html/posToProbeAnnoEnvironment.html
c29ee103bc43257474fd5c003492e0a4 *html/preprocess.html
ee3d09536f6b3c1402c90f7630aae68e *html/probeAnnoClass.html
6c1a2f6749e4a18d19f203437571b5aa *html/qopS4.html
0e8ecb318bcb7096f44e70e7d929b6b1 *html/quantilesOverPositions.html
f097b4eb1c417cbb9b32cf0b671f65da *html/readNimblegen.html
fdbb0c151cc14b7a228e3a8276e006d6 *html/regionoverlap.html
2a8b1e692004b402504c2362e3bef3f5 *html/relateCERs.html
8e5c7fd9f1567c29aa1fa3cdfcb42bad *html/sigGOTable.html
fc7d2f09cb45d62e9f3c80a2720c6898 *html/sliding_meansd.html
162eab17f98c29732e504740a2349f48 *html/sliding_quantile.html
beeaf102bb39b88ca6c6065ab9f07d4c *html/twoGaussiansNull.html
cf256d494b339aab7359f1446e8d78cf *html/upperBoundNull.html
d0ea520b921562081e9c4c1f962132db *html/validProbeAnno.html
30f2faacc04f9ab403d054e0a5128d7e *libs/i386/Ringo.dll
c55a86609c557e2a8a45aead004b6842 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
