3f016d493838bab615a80029feff971d *DESCRIPTION
c4c2e0baa105db28ad62b4ba6f5e99b6 *INDEX
10247959be3d1c6ed6b9341e23cf4a0d *Meta/Rd.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
59022dda4cccd2f2f51a37e444839a5e *Meta/hsearch.rds
5ac996e021fce51264a3b1ce85c4d543 *Meta/links.rds
422a433e3c913a06f1bd8394446e12ac *Meta/nsInfo.rds
ce77737316122dbc27f975899941e93c *Meta/package.rds
1ffc64cb93d2efe3407544563aa6cfe5 *Meta/vignette.rds
39785d75c0fd5a919b21824142838c56 *NAMESPACE
ac0fca268eea3c78ad0db4f94f2f9b32 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Rhtslib
acbaa62796ab17acd07b196d451068e8 *R/Rhtslib.rdb
d645c1afbdd292cb7bb03e1ac257a492 *R/Rhtslib.rdx
b18cf950e31461dabd1d046183873716 *doc/Rhtslib.R
b6301bb025c0ea2525b62bb2be37f1b5 *doc/Rhtslib.Rmd
a9fb746138d286ccea8b4906facc214f *doc/Rhtslib.html
2c73dd1495d89757a6b9462cf4b2cb3f *doc/index.html
08ab35ecf014a5d0cd459d5285ac3020 *help/AnIndex
4a95806ef847da398b6e407bdad75249 *help/Rhtslib.rdb
32d526254fdd992a0bc07c567078b563 *help/Rhtslib.rdx
4e91c9236e000959d850bf0174025cd4 *help/aliases.rds
83746b956a1126463b170a55bc951307 *help/paths.rds
4898f475e02a516fb131b5a7bb475c7c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a85ee7dbb19b02635de2bee017145e1d *html/Rhtslib-package.html
7ec2d32d308a9c5dd925fe497b82f9c8 *html/pkgconfig.html
27a97b9c536dccf1e035d2a5035fa5b6 *include/README
fb4de0bf7087045ba44af1b3f73c784d *include/bam.c
07e7f95f9c010ad896e9523b6e5c7bce *include/bam.h
1e3540a867e2326682b39c1a66cc1bf5 *include/bam_plbuf.c
82ab94a1f089f10f1ce7fb3ed55c4783 *include/bam_plbuf.h
3afb5d8493c75c4c046e6dd7a456ae79 *include/bam_sort.c
8d525490c1597cb3a842a5b6dd8f1bba *include/htslib/bgzf.h
c662863c5dfce286e50c0b2ada6e736d *include/htslib/cram.h
a2f6784deab88321925432b8de1458c1 *include/htslib/faidx.h
bab86d8f44d31d6458245025b5b5d8c5 *include/htslib/hfile.h
3ed651c2a298d421f7d01c6d2107b468 *include/htslib/hts.h
a4a87b11c3dc8f027c736a64e34e6f85 *include/htslib/hts_defs.h
352f7393f19e90db5bb5a7a48bf2c010 *include/htslib/hts_endian.h
05683224b93f5e05a9753d15e94f10dd *include/htslib/hts_log.h
5991c26ed0817424d4707656627e5a69 *include/htslib/hts_os.h
a12dbb0477418e210bc7dddfa6cbe3e1 *include/htslib/kbitset.h
aeb30352ddb823e20cc5433f6cbc2222 *include/htslib/kfunc.h
5c5c83f9ae8fc5bdbc5ec4b4463862dc *include/htslib/khash.h
442cf7482c13f09e866dd5fafdbaec17 *include/htslib/khash_str2int.h
c35c25ebf396c96de5d9b23b94d9d482 *include/htslib/klist.h
5987163822f99f16a54e910b545b5a47 *include/htslib/knetfile.h
5ec8ac1d46d286bc35ce3996bb3ed1fa *include/htslib/kseq.h
6aeb3df4a9b7f87b47cb7a44200b34c1 *include/htslib/ksort.h
d97d295260c297bd4e180b8181b314da *include/htslib/kstring.h
0ac853e83ae5e340769c6ed6c6eea255 *include/htslib/regidx.h
bf91cd2108656e84117db9d1ba1bbbb7 *include/htslib/sam.h
308e6fcd28bbf61745a0782325b7d84a *include/htslib/synced_bcf_reader.h
db21492055f6d04ecffc5620b8b84194 *include/htslib/tbx.h
50bd57fa55be8467cf96d75e4c5ac897 *include/htslib/thread_pool.h
92345dbea1b262ee5edf4bf61335c900 *include/htslib/vcf.h
d0ffea9bc7a6bc392c8684c97c23368e *include/htslib/vcf_sweep.h
cebb93dd9d9f64ffb93883a5832070ef *include/htslib/vcfutils.h
0099f6612030d0e7bae0c7b95024bbc4 *include/sam.c
54022216fe13d70bb0a0fc869e773b8d *include/sam.h
4bbc9afdc24373432bac7193b6093c1d *include/sam_header.h
1e52f6c147514f6d58a443ba2408d845 *include/sam_opts.c
8d187fc36b80f21514571451f5a6693f *include/sam_opts.h
6572521ea47193c931dcc0718f45094b *include/sam_utils.c
61ab80c19e4726e4011e5791d2aeb43c *include/samtools.h
9296fd1e3c233e2d01bbd6e37d3d60fa *include/version.h
b934e6c5ae8854ec351a94ce66cdfc8c *libs/i386/Rhtslib.dll
5cc98305f2ff186994affd4b8eb8af42 *libs/x64/Rhtslib.dll
aef5fa3c8222ebebd854034b76236538 *testdata/auxf#values.sam
fb2de660e7d5e5238875d628a2aae567 *testdata/auxf#values_java.cram
d28ff5fcc4d0047ec0001e54f2f10e23 *testdata/auxf.fa
7e8fa919cf80797a912221fdeb52f72e *testdata/auxf.fa.fai
1cf3c08841184582e8db4ed483958af3 *testdata/c1#bounds.sam
85fe4fd282e64adb93b5b7789f2632f0 *testdata/c1#clip.sam
1196b53427f8cb7e57028c9a9c316894 *testdata/c1#noseq.sam
71bb8e8c5cb4f86d7dccb4206506ecc0 *testdata/c1#pad1.sam
aba0bb2d0079499b50961c8f0f7c520e *testdata/c1#pad2.sam
ac9b9cf18079d07d61eb6db66384f011 *testdata/c1#pad3.sam
1628e92d4a04185b8dadada2221482e8 *testdata/c1#unknown.sam
d80442fcdb8a146476c4a69c5033befe *testdata/c1.fa
2f537adf9e10a6f3e6445f7f8284bed2 *testdata/c1.fa.fai
225f59dc95977cbc1ecd3adbaa761f00 *testdata/c2#pad.sam
bd0371ae0e2244c7f548852d421ee3f4 *testdata/c2.fa
bacddce6bec3f7da347359cfa7357d72 *testdata/c2.fa.fai
8ed4fdbc2be420fe69537e878b7a9d59 *testdata/ce#1.sam
877069c3b73a6eba83e7746198c07d85 *testdata/ce#2.sam
ebb33192f142425194f4520b99a28113 *testdata/ce#5.sam
f6974a85bb62f181d547b2758dafe1ad *testdata/ce#5b.sam
a5e7634db2df4aa2925ad9dbdf4dffe0 *testdata/ce#5b_java.cram
7e76d143ad5d0369d81fd2310c394fe7 *testdata/ce#large_seq.sam
a13c2849298e4180bbda657992b647a6 *testdata/ce#supp.sam
84ea6309b8666e83048c9d60e6109f9c *testdata/ce#tag_depadded.sam
d2822558628321aa187fb8eb4acb6fff *testdata/ce#tag_padded.sam
4196c29b1daebf2f072925a32ca930d9 *testdata/ce#unmap.sam
16046e6ba531c379d3d26e0b212b39a3 *testdata/ce#unmap1.sam
966ef7223e7649a99efc5c6029a878ff *testdata/ce#unmap2.sam
cfdd101d3d08fc60f60f2aa63a7055d4 *testdata/ce.fa
caf7cc4f77dcf116369d0b48ff83d5b4 *testdata/ce.fa.fai
11a81ea09d375bf75565e209f937514f *testdata/faidx.fa
b81ccf56e6a6a84ad9365e2bc3329801 *testdata/fieldarith.sam
965c02531edcf896022c867f2aba3aa0 *testdata/formatcols.vcf
d5f0f97cc4926cc1df7553dbabe19723 *testdata/formatmissing-out.vcf
d5f0f97cc4926cc1df7553dbabe19723 *testdata/formatmissing.vcf
9621fcaa95ed603b13ef585dd869d57b *testdata/md#1.sam
25e3af5db6506317564059876ee08fc0 *testdata/md.fa
b14c43520985e77e0898f1c9ecd0637c *testdata/md.fa.fai
8a8a4c82dfe06e48d0ae7407332a5f39 *testdata/noroundtrip-out.vcf
fc5c8cff45f39fc42681d0e502e3c86c *testdata/noroundtrip.vcf
91e7e591625b466e22d59cd479e83a69 *testdata/tabix/bed_file.bed
a3ca4493f951df2467fed1d68b931beb *testdata/tabix/gff_file.gff
75c420357c4d787e7972bc7a8882cc6e *testdata/tabix/large_chr.vcf
6a998000eacc14ff2e94483ae0847f87 *testdata/tabix/vcf_file.vcf
e30fafaf3430f91d0a6df845f6ee8ac0 *testdata/test-vcf-hdr-in.vcf
d41d8cd98f00b204e9800998ecf8427e *testdata/xx#blank.sam
4707816d39fb24851b4a55b4da1bb7a2 *testdata/xx#large_aux.sam
6915beff0fd50f3e3e3615ef0fa111fa *testdata/xx#large_aux2.sam
687f33311fa7ab69e03632a172139ad0 *testdata/xx#large_aux_java.cram
e7cfb90690ba8b0b3123b5750fca4810 *testdata/xx#minimal.sam
2349b1bbbb2e5af5e81a786e3a1c72b1 *testdata/xx#pair.sam
3fb60cb838a2f0b4c91fbdc7095247a8 *testdata/xx#repeated.sam
2d298fb75099fbf0c1eda326536df856 *testdata/xx#rg.sam
10a75a063b03e018b1e0093e448dfacd *testdata/xx#tlen.sam
3b15464da6d57edf3a03211f42b190dd *testdata/xx#tlen2.sam
ca2c1dbbc1f49e7e77310ed1769d2a43 *testdata/xx#triplet.sam
e89624b6e9e818d60134c747418eb5ce *testdata/xx#unsorted.sam
fca0be9dbb8756342cbaa4266477bbdd *testdata/xx.fa
0b3ec50b8a121a96d4104cc3c99d95b1 *testdata/xx.fa.fai
ae87bb12ccc7afd16f427cdc0b741684 *usrlib/i386/libhts.a
1ea38d30851a13c35c0d046b31b63337 *usrlib/x64/libhts.a
