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| aggregate | Method aggregate |
| aggregate-method | Method aggregate |
| AGGREGATES-Object | AGGREGATES object class constructor |
| ALL | PARAM object class constructor |
| ANY | PARAM object class constructor |
| arrange | Method arrange |
| arrange-method | Method arrange |
| ASC | Ordering functions |
| AVG | AGGREGATES object class constructor |
| BAG | AGGREGATES object class constructor |
| BAGD | AGGREGATES object class constructor |
| collect | Method collect |
| collect-method | Method collect |
| compile_query | Compile GMQL query |
| compile_query_fromfile | Compile GMQL query |
| condition_evaluation | Condition evaluation functions |
| conds | Condition evaluation functions |
| COUNT | AGGREGATES object class constructor |
| COUNTSAMP | AGGREGATES object class constructor |
| cover | Method cover |
| cover-method | Method cover |
| Cover-Param | PARAM object class constructor |
| delete_dataset | Delete dataset |
| DESC | Ordering functions |
| DG | DISTAL object class constructor |
| DGE | DISTAL object class constructor |
| DISTAL-Object | DISTAL object class constructor |
| DL | DISTAL object class constructor |
| DLE | DISTAL object class constructor |
| DOWN | DISTAL object class constructor |
| download_as_GRangesList | Download Dataset |
| download_dataset | Download Dataset |
| Evaluation-Function | Condition evaluation functions |
| execute | GMQL Function: EXECUTE |
| export_gmql | Create GMQL dataset from GRangesList |
| extend | Method extend |
| extend-method | Method extend |
| filter | Method filter |
| filter-method | Method filter |
| filter_and_extract | Filter and extract function |
| group_by | Method group_by |
| group_by-method | Method group_by |
| import_gmql | Create GRangesList from GMQL dataset |
| init_gmql | Init GMQL server |
| login_gmql | Login to GMQL |
| logout_gmql | Logout from GMQL |
| log_job | Show a job log or trace |
| map | Method map |
| map-method | Method map |
| MAX | AGGREGATES object class constructor |
| MD | DISTAL object class constructor |
| MEDIAN | AGGREGATES object class constructor |
| merge | Method merge |
| merge-method | Method merge |
| META | OPERATOR object class constructor |
| MIN | AGGREGATES object class constructor |
| NIL | OPERATOR object class constructor |
| OPERATOR-Object | OPERATOR object class constructor |
| Ordering-Functions | Ordering functions |
| Q1 | AGGREGATES object class constructor |
| Q2 | AGGREGATES object class constructor |
| Q3 | AGGREGATES object class constructor |
| read_gmql | Function read |
| read_GRangesList | Function read |
| register_gmql | Register into remote GMQL |
| remote_processing | Disable or Enable remote processing |
| run_query | Run a GMQL query |
| run_query_fromfile | Run a GMQL query |
| sample_metadata | Show metadata list from dataset sample |
| sample_region | Show regions data from a dataset sample |
| save_query | Save GMQL query |
| save_query_fromfile | Save GMQL query |
| select | Method select |
| select-method | Method select |
| semijoin | Semijoin condition |
| setdiff | Method setdiff |
| setdiff-method | Method setdiff |
| show_datasets_list | Show datasets |
| show_jobs_list | Show all jobs |
| show_job_log | Show a job log or trace |
| show_queries_list | Show all queries |
| show_samples_list | Show dataset samples |
| show_schema | Show dataset schema |
| SQRT | OPERATOR object class constructor |
| STD | AGGREGATES object class constructor |
| stop_gmql | Stop GMQL server |
| stop_job | Stop a job |
| SUM | AGGREGATES object class constructor |
| take | Method take |
| take-method | Method take |
| trace_job | Show a job log or trace |
| union | Method union |
| union-method | Method union |
| UP | DISTAL object class constructor |
| upload_dataset | Upload dataset |