d899626bfdd384dd91c8b8199e8faa4f *CITATION
0d3efab51f821e92c804f6f5eb4f4979 *DESCRIPTION
e8590c21ca5e59f97ba8a4f64e4ddec0 *INDEX
6732c5788ab8162e28de20e0a5857483 *Meta/Rd.rds
d15f1152021c968dfc1ddf89922cb1d3 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
e9873d8bc5411fb241fa75e9dc2a8d9f *Meta/hsearch.rds
1a605bf72b8f9b5698885a449c75c071 *Meta/links.rds
7d48568a939fb0b1b0a3336eb40b5274 *Meta/nsInfo.rds
a3df926940383e2242f5e13247a7ae9b *Meta/package.rds
51aafb88901612701a87309bfb1394f7 *Meta/vignette.rds
49ac124b0d4a80bf7dc47b79715e3f68 *NAMESPACE
c37a4f5f2a74fcbf3abf08197ae6ad4b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RCAS
e84230e576aebd6a5ff8089c2a67d54b *R/RCAS.rdb
657d6cd1ee0c77d00f5a632e22ea79be *R/RCAS.rdx
1936ad61178f281417ce45622de866ad *data/Rdata.rdb
820e1188306791f30c0c2646b1a71577 *data/Rdata.rds
5a43ff6902924b444a0331598ac9e9ad *data/Rdata.rdx
2c0fc3deefcbcf2a786efa6d7b56e189 *data/datalist
2077b16a28c9acba8e80be8fb64ee38e *doc/RCAS.metaAnalysis.vignette.R
fe54a2d6bc82f877aea6d5309fd7b999 *doc/RCAS.metaAnalysis.vignette.Rmd
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03d0870863a622109453f2f188ef60b2 *doc/RCAS.vignette.R
eae14c71cd3106b4a2c54d86bee3ead6 *doc/RCAS.vignette.Rmd
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247e560902e4d56eb3cc2fe9bec32180 *doc/index.html
4f8573e5f8b697319117c88327a4a236 *extdata/EIF4A3Sauliere20121a.bed
2779ca3ab60fcb8e560e86978c5aa1d2 *extdata/EIF4A3Sauliere20121b.bed
32aa8a32aa4b0b1b69dd340437d6e924 *extdata/FMR1_Ascano2012a_hg19.bed
d4d7442832f9b1d40ed3bb589326839a *extdata/FMR1_Ascano2012b_hg19.bed
5ae985d0d00b8dbc5c4e51481d2799b4 *extdata/FUS_Nakaya2013c_hg19.bed
53ec61cdf36a09a61f64ca31fdf0a0ae *extdata/FUS_Nakaya2013d_hg19.bed
2af4c54bf647b7e46dec40972101443e *extdata/hg19.RCASDB.sqlite
f0de64b19c59a7b202c8faff4d599ace *extdata/hg19.sample.gtf
99fb8d5b4e2fc1a11b4e92d5bd994d05 *extdata/hg19.sample.gtf.granges.rds
aa87ec9a0e15f7849d72747634b911ce *extdata/msigdb_test.gmt
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile.bed
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile2.bed
5c2561dda8172f73b4b71fc28d36768c *help/AnIndex
8db6f5c32e4029fa604cfe2cfaa7f46b *help/RCAS.rdb
f5dadba659f28709f94f55a20b368e7f *help/RCAS.rdx
73258c042fba589a8b125a44064ce2cf *help/aliases.rds
6cf765df349e9e3e4d3d4c012a0760fd *help/paths.rds
4423f0c213ca9e2078a5062b3bec3d06 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
df8c3439543540f5571248027d524429 *html/calculateCoverageProfile.html
e9833b3315bb3a6b61fb66bdde6b67d8 *html/calculateCoverageProfileFromTxdb.html
fc07ac31de25f35ac2e358d3bdd69677 *html/calculateCoverageProfileList.html
706ab1cc924c4ef6bf34629e4032b41f *html/calculateCoverageProfileListFromTxdb.html
a6ffc2580e31b1b5e7e85478e53c1d53 *html/createControlRegions.html
88713641e98cb87e0f875c4f4b195016 *html/createDB.html
b463679379cfb7a8d63b76a522182e21 *html/createOrthologousGeneSetList.html
5455aec14b7e5904a7ba2b77ace7c737 *html/deleteSampleDataFromDB.html
8ab601ed5bc660708f90a2554d304c8b *html/discoverFeatureSpecificMotifs.html
3f3ac33c7a0c7136c89272a078dc1fe8 *html/extractSequences.html
f3c30848f47062bda6f55c58926be6a7 *html/geneSets.html
a99da807b7ecb88495623b98da8f611a *html/getFeatureBoundaryCoverage.html
6a24bfdf60bc536a37263b6fd9ecacf3 *html/getFeatureBoundaryCoverageBin.html
8ccfeb2c0334b9008fbdb15cc34357a9 *html/getFeatureBoundaryCoverageMulti.html
2bda009e784fd1a7029d2b83ce6ad7bc *html/getIntervalOverlapMatrix.html
8c47ebbcb517f6cc714accb350260042 *html/getMotifSummaryTable.html
95ab6c82b1a025750119df0f64fb557c *html/getTargetedGenesTable.html
5a25f4441aa84eaf4cbf193710db7961 *html/getTxdbFeatures.html
e88234105d0d54e35ee4babdad9e40f4 *html/getTxdbFeaturesFromGRanges.html
e157f91f642b5aab84ef2a961d8ca3ae *html/gff.html
47d07fee8f2b2a344f03cc16cddd3c6b *html/importBed.html
18bcae8cc95002fddd5afddfdc2072ab *html/importBedFiles.html
f7aeea219795152d626d37716e64e3e7 *html/importGtf.html
69fa17d103063016df16e13078a0e84a *html/parseMsigdb.html
6a69e905fbbf25b72269185d1627eda6 *html/plotFeatureBoundaryCoverage.html
6f58861b31aba6b67e87a240231f18e1 *html/printMsigdbDataset.html
ab91c7c3982a6dc3e087e6e7a1e458e9 *html/queryGff.html
e592653982d704aedbc4cbde1e4c9fac *html/queryRegions.html
90fdbeb42fa0df36accfb5f218846daa *html/retrieveOrthologs.html
3f7621eac8fb757e2d6343c4a0bc567d *html/runGSEA.html
8f3b10aba4115c653bf45b80baef8ec4 *html/runMotifRG.html
4727fc4d4d9e2a2eef04f4d08c182a34 *html/runReport.html
a0be21de43275042e0d9f1ce28b2fbf1 *html/runReportMetaAnalysis.html
4645b3647b1ac76fdf15a5f9426bbd64 *html/runTopGO.html
148b2e9cfc27f6f6a8b4e8e9a766a83e *html/summarizeDatabaseContent.html
4327989d6b7b2e4cea55e932b1ced3f0 *html/summarizeQueryRegions.html
8ccf8d41efcc5b6fa0d04795641ac3c8 *html/summarizeQueryRegionsMulti.html
053cf68e09070e277a798b0736fb7874 *reporting_scripts/footer.html
b1442cb874099cb5af45301431024ee0 *reporting_scripts/header.html
ca9f8bbe5141ee97943aadede0fac8d1 *reporting_scripts/report.Rmd
e6ab695c29d907c81228c883e5af619c *reporting_scripts/reportMetaAnalysis.Rmd
