| findTaxonomy {PathoStat} | R Documentation |
Find the taxonomy for unlimited tids
findTaxonomy(tids)
tids |
Given taxonomy ids |
taxondata Data with the taxonomy information
example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
taxonLevels <- findTaxonomy(tids[1:5])