R: Find the taxonomy for the given taxon id name

TranslateIdToTaxLevel {PathoStat}

R Documentation

Find the taxonomy for the given taxon id name

Description

Find the taxonomy for the given taxon id name

Usage

TranslateIdToTaxLevel(pstat, input.id.vec, tax.level)

Arguments

`pstat`	pathostat object
`input.id.vec`	names containing id
`tax.level`	target taxon level

Value

target taxon level names

Examples

data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
names.new <- TranslateIdToTaxLevel(pstat_test,
c("ti|862962|org|Bacteroides_fragilis_638R",
"ti|697329|org|Ruminococcus_albus_7" ),
"genus")

[Package PathoStat version 1.8.4 Index]