R wrapper for the OMA REST API

Documentation for package ‘OmaDB’ version 1.2.2

OmaDB-package	OmaDB: A package for the orthology prediction data download from OMA database.
$.omadb_obj	Resolve URLs automatically when accessed
bulkRetrieve	Bulk retrieve information for a list of proteins
formatTopGO	Format the GO annotations data
getAnnotation	Get GO annotation for a sequence Function
getAttribute	Get the value for the Object Attribute
getData	Get the Data Function
getGenomeAlignment	Get Whole Genome Alignment Function
getHOG	Get the HOG Data Function
getInfo	Get further information for a dataframe of members
getObjectAttributes	Get the Object Attributes
getTaxonomy	Get the Taxonomic tree function
getTopGO	Get the topGO Object function
getTree	Get the Tree Object
getXref	Get the CrossReferences in the OMA database for a pattern
group	An example OMA group object.
hog	An example HOG object.
mapSequence	Map the Protein Sequence Function
OmaDB	OmaDB: A package for the orthology prediction data download from OMA database.
orthologs	An example orthologs object.
pairs	An example genome alignment object.
protein	An example protein object.
resolveURL	Get the Further Information behind the URL Function
sequence_annotation	An example dataframe containing GO annotations identified from a given sequence.
sequence_map	An example dataframe containing proteins identified from a given sequence.
taxonomy	An example newick format taxonomy object.
xref	An example xref object.