| txSeqsFromFa {ORFik} | R Documentation |
A small safety wrapper around extractTranscriptSeqs
txSeqsFromFa(grl, faFile, is.sorted = FALSE)
grl |
a GRangesList object |
faFile |
FaFile or BSgenome used to find the transcripts, |
is.sorted |
a speedup, if you know the ranges are sorted |
a DNAStringSet of the transcript sequences
Other ExtendGenomicRanges: asTX,
coveragePerTiling,
overlapsToCoverage,
pmapFromTranscriptF,
reduceKeepAttr, tile1,
windowPerGroup