57034ab32381db7428a7faf48062202a *CITATION
6ddbdc2ba9671ad9347602301ecda3e1 *DESCRIPTION
9fb8b8224d9ba9fe843e215a8a86eebe *INDEX
1d012e3e2065e6cd470861d2a4895b02 *Meta/Rd.rds
91b246966cac1aa43403bc511114a71b *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
fe2b4e1f443c67144df1be3dd953a169 *Meta/hsearch.rds
ba3d3d13562b0fc622d65a707f9470e5 *Meta/links.rds
cce63c70bce3e8c4c088e50db6219818 *Meta/nsInfo.rds
19ba36ca7fb7c3341dd8ad5b355fe5f7 *Meta/package.rds
e462371f3718ae08da867089401dacfa *Meta/vignette.rds
098283cd994101f37f049806d9c5d032 *NAMESPACE
3bc08bc05c5ad737ca2132a4ced3635c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/NormalyzerDE
551c0a6393d3e8cd3ae823128a1d246c *R/NormalyzerDE.rdb
59bcf115db024466224c4ed250ccb942 *R/NormalyzerDE.rdx
dc36cb8de8a2ec6c939b65e1d5b8c1eb *data/example_data.rda
5ebd2bab3dc3355e00c4736b445c8a67 *data/example_data_only_values.rda
91288603bce7f6b8469e8ab1c6605fe8 *data/example_data_only_values_small.rda
191e54a8670c582213d7f7c67d449cba *data/example_data_small.rda
43b7e1305cfc5c81f8deacfaa005127f *data/example_design.rda
39cbff4d62e6747b683b8c639d33740e *data/example_design_small.rda
980cda1def9bf8153a3349e2a8c5ec90 *data/example_stat_data.rda
2dd2332b7e83d057b8ffbc8d45e7c0e7 *data/example_stat_summarized_experiment.rda
4b5ddfca35ec3ed553766bde87bd7cdf *data/example_summarized_experiment.rda
1ecc82223ad62bcb2e97740c79f02c3c *data/regression_test_nr.rda
738f61557e2f51927b14ae44218b16f9 *doc/index.html
3e276c343af49dcb7610e0c815e94be6 *doc/vignette.R
7e0b0528de3ae4161189d5ca61a89105 *doc/vignette.Rmd
19c4bb40c8a409cd20a7fae5c7536317 *doc/vignette.pdf
1e7cf24d1782a5782e196632ed7f235c *extdata/data.tsv
60a8d069fdaf31017c4240f13471c860 *extdata/design.tsv
688ef0631cc27c9e5bc10395dda8353a *extdata/design_tech_rep.tsv
00561b5b0b29bb91824a93355d73d006 *extdata/tiny_data.tsv
6f7bd66f1b0d4a6aef2d659a82fa05cb *extdata/tiny_design.tsv
8f6497d23ce5f21dfa2698a05ff4a783 *help/AnIndex
a3617f3aa48be85d97fa786289726d02 *help/NormalyzerDE.rdb
796b236326d578ef7a718af16c3a4e49 *help/NormalyzerDE.rdx
67f32909e80e604710df094bf68673c0 *help/aliases.rds
5d2fb0dd0d496ad2536667742441ff79 *help/paths.rds
fe788748082377ca3bc2ad3fa6069c8e *html/00Index.html
cfaa41af896a4998e2709c026f56debf *html/NormalyzerDataset.html
364ee4462c7482a9dff3af86807cea0d *html/NormalyzerEvaluationResults.html
2338bb3be52cc29473d43b1927d60279 *html/NormalyzerResults-class.html
6ba30375de6cdc7fcf61979aa3345995 *html/NormalyzerStatistics.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4e56cc71f8fa6ffa61170e9ed32e7b32 *html/analyzeNormalizations.html
cf8dde9a654b33dc4a290ef6384d6ab2 *html/calculateANOVAPValues.html
c99904fd1fc8fe62be90fc803353d01c *html/calculateAvgMadMem.html
f80708709df2f61a074c3b5ac5264c57 *html/calculateAvgReplicateVariation.html
0c5dda3f4d2a4e7ac632676a50775d9b *html/calculateContrasts.html
4513aa210f2efbfb93b2b00459861b7f *html/calculateCorrSum.html
b7cff4617aa089ea65bfbba65f013de7 *html/calculateFeatureCV.html
a7388cabfdf6ee2af582626f1b03bbac *html/calculatePercentageAvgDiffInMat.html
910c0c63e06c77974cd02b27e3917ca5 *html/calculateReplicateCV.html
7b23b96d0dffe08f257b877972a936f1 *html/calculateSummarizedCorrelationVector.html
48a87d85bfd24824b9f2a014379afc49 *html/createDirectory.html
8af1f9aecd749e8ec6bdd7d1c4149fe7 *html/detectSingleReplicate.html
09e02b31bc448bb66ba00b8cd8c77ad2 *html/detectSingletonSample.html
db2461ace91812b24a4f03a539e55211 *html/elapsedSecondsBetweenSystimes.html
b2d7d3fa2a2644dc28277114fef048da *html/example_data.html
80079b0ae949b95ab7f79a24143881b4 *html/example_data_only_values.html
7b24b7062d01b5257031a764344537cf *html/example_design.html
f62ca9decb853f46b97f6f983a53505f *html/example_stat_data.html
dc6b6cb4e8652e2a86359f9a12846885 *html/example_stat_summarized_experiment.html
612415dfcc9ca10bab852ef280dd9649 *html/example_summarized_experiment.html
4e4487ac8f0addeb7b3dc7220ddc4399 *html/filterLowRep.html
254f4ceb2826768f381eb1433ee669c5 *html/findLowlyVariableFeaturesCVs.html
7abb432bb2f9860d8b9ee3d8f3172868 *html/generateAnnotatedMatrix.html
d4370da994e1b4adce18ca116c893b8c *html/generatePlots.html
71c0e2f35655ca6324e0e3030d05ba18 *html/generateStatsReport.html
924d03947124cdc02406c6b6eeabdf8c *html/getCombinedMatrix.html
643670e71e69c2da4fb543c1f65e98ce *html/getIndexList.html
d664468a61d0873ad68fc721821be8b4 *html/getLowCountSampleFiltered.html
ab4e82a3592aff8c2a9bdd152bea3591 *html/getRTNormalizedMatrix.html
f277d8f27ca5b81dc9260d8d9d74d88c *html/getReplicateSortedData.html
3613688f67794c55e28474b9e4ddd410 *html/getRowNAFilterContrast.html
44d7a06fffa97a0cae7eaeb00e852278 *html/getSmoothedRTNormalizedMatrix.html
f52ccd7787fa9684cade394e180d0149 *html/getVerifiedNormalyzerObject.html
fa1f9f8b4b0418b1f4ac1c7fa77f709b *html/getWidenedRTRange.html
6c7c76c5d9d97e834a1907cb531cc090 *html/globalIntensityNormalization.html
70310d197f4cfbba4fa2cb877db38bb1 *html/loadData.html
f4077fb8ca6bf0c4e8052c971384d397 *html/loadDesign.html
b5763d91cc2e64837529493287d7c4ee *html/loadRawDataFromFile.html
d1fb435ca6c59b7f8f29413f5f797054 *html/meanNormalization.html
d6cb2c717acde45f147757ef8f901bb8 *html/medianNormalization.html
526e8ff2b4a163a4315dc60e1e8363bd *html/normMethods.html
78562695398170ae4292cff26acc77d8 *html/normalyzer.html
dc3d2a88b1c28898bd5cbd837ef5f2ba *html/normalyzerDE.html
4aa2525abfa7f1d0a8eeebd87acf8316 *html/performCyclicLoessNormalization.html
383be5cc0b70ad7e9cc0499ba47ed351 *html/performGlobalRLRNormalization.html
daa4932cf247234d1c6e338248a6c067 *html/performNoNormalization.html
6e60bf2a311fb8fb6cb7c69f01a17faf *html/performNormalizations.html
d3128c9cc2f5f4341bf180ea657e82a6 *html/performQuantileNormalization.html
b8569077df0d013e85af4e6ad76db996 *html/performSMADNormalization.html
c0c4ed5a566d0f78ae1d7b84557f6d28 *html/performVSNNormalization.html
08fe13aa4f9e4a30c4fab92689864e5b *html/plotBoxPlot.html
94aa69b9e7f3f0ec389c705163581fc8 *html/plotCVvsIntensity.html
0a114f8dc95590c330d3df859404b479 *html/plotContrastPHists.html
73b09c833285e76337592c05200b3599 *html/plotCorrelation.html
ca79c4ab02d1d2fac71e5d407894a509 *html/plotDendrograms.html
1225ade25738033177a305d02fac864d *html/plotDensity.html
5566432da0bc48783ec1d89551ac9b2e *html/plotFrontPage.html
acde4906715807336af3e03c4f15d301 *html/plotMA.html
715b56599d3350c641e9db463a8dd541 *html/plotMDS.html
7db105f66e29849f40fadc0fa130bf99 *html/plotMeanSD.html
f5442e63c0000a8847e79fe79ddb000b *html/plotPHist.html
7b44882a3fa95b9b3e7b62ed720400a3 *html/plotQQ.html
53fb7a1ed2121547ad022831d6d0ed14 *html/plotRLE.html
42d720150207daa56e8b2a0a026dbe15 *html/plotReplicateVarAndStableVariables.html
eee36db12e677d65bdfdde20d3ac0e72 *html/plotReplicateVariance.html
dfa35829f60de54da5501a3b967a2848 *html/plotSampleOutlierSummary.html
e8c7e61efea7987dc13d2d23534f2293 *html/plotScatter.html
aca4199b721574139296951de6f28534 *html/preprocessData.html
5c5ae8d37705f8098e60ab199c35dde6 *html/printMeta.html
244c070f098a34a78141226c857bd38f *html/printPlots.html
caf836ff349f79ec20d4d330ee47c586 *html/reduceDesignTechRep.html
272e614dd6041daa9b0c51443718f2ef *html/reduceTechnicalReplicates.html
efc928e5f8340373c5f7b3e479cc10f7 *html/regression_test_nr.html
be809d77e1aa5e61fd00714353bd2975 *html/setupJobDir.html
4b1bb6a27bee4c03eb33b48b20f09056 *html/setupPlotting.html
a2fd6a05478a8055c9d31e3ad3ba7a66 *html/setupRawContrastObject.html
f02e2233fc1bc6438fcd734f319f42a1 *html/setupRawDataObject.html
c8b3aa1a5517a1f4746bd83d5e410cf9 *html/setupTestData.html
8c8076fe9684d681aa6e62fbe6d1a3d0 *html/validateSampleReplication.html
7422f085b4a70eac9476127cbf09164f *html/verifyContrasts.html
6753584f5196401e972270133df9b760 *html/verifyDesignMatrix.html
c749bb009575e8d06c6a3abc350d801f *html/verifyMultipleSamplesPresent.html
6e1dca94db76d2555f814a123f638a9d *html/verifyValidNumbers.html
ea5c61ad9a07bb3cd93d9b5ef3fed525 *html/writeNormalizedDatasets.html
