NBSpliceRes-initialize {NBSplice}R Documentation

NBSpliceRes object constructor.

Description

initialize creates an NBSpliceRes object

Usage

## S4 method for signature 'NBSpliceRes'
initialize(.Object, results, lowExpIndex, contrast,
    dispersion)

Arguments

.Object

NBSpliceRes class object.

results

Data.frame with NBTest results of expressed isoforms.

lowExpIndex

Numeric indicating the positions of low expressed isoforms.

contrast

Character indicating the contrast used for NBTest.

dispersion

Numeric with the estimated gene dispersions.

Value

NBSpliceRes object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp, plotVolcano

Examples


data(myDSResults, package="NBSplice")
myResults<-results(myDSResults, filter=FALSE)
myLowExpIdx<-lowExpIndex(myDSResults)
myContrast<-contrast(myDSResults)

myNewDSResults<-NBSpliceRes(myResults, myLowExpIdx, myContrast)
[Package NBSplice version 1.0.1 Index]