BatchRemove             Batch effect removal
CellCycleView           Estimate cell cycle time for all samples
                        compared to control sample and view.
CorrView                Visualize the correlation between two object
CutoffCalling           Call cutoff
DensityDiffView         Density plot for beta score deviation between
                        Control and Treatment
DensityView             Density plot for gene beta scores in Control
                        and Treatment
EnrichAB                Enrichment analysis for Positive and Negative
                        selection genes
EnrichSquare            Enrichment analysis for selected treatment
                        related genes
EnrichedGSEView         View enriched terms in GSEA
EnrichedGeneView        Visualize selected genes in enriched genesets
EnrichedView            View enriched terms
FluteMLE                Downstream analysis based on MAGeCK-MLE result
FluteRRA                Downstream analysis based on MAGeCK-RRA result
HeatmapView             Draw heatmap
IdentBarView            Identical bar plot
KeggPathwayView         Kegg pathway view
MAView                  MAplot of gene beta scores
MapRatesView            View mapping ratio
NormalizeBeta           Normalize gene beta scores
RankView                View the rank of gene points
ReadBeta                Read gene beta scores
ReadGMT                 ReadGMT
ReadRRA                 Read gene summary file in MAGeCK-RRA results
ReadsgRRA               Read sgRNA summary in MAGeCK-RRA results
ScatterView             Scatter plot
Selector                Select signatures from candidate list
                        (according to the consistence in most samples).
SquareView              Scatter plot of 9-Square
TransGeneID             Gene ID conversion between ENTREZID and SYMBOL
ViolinView              Violin plot
VolcanoView             Volcano View
Zuber_Essential         Core essential gene list
arrangePathview         Kegg pathway view and arrange grobs on page
countsummary            Count summary data generated by running MAGeCK
                        count
enrich.GSE              GSEA
enrich.HGT              Do enrichment analysis using Hypergeometric
                        test
enrich.ORT              Do enrichment analysis using
                        over-representation test
enrichment_analysis     Enrichment analysis
getOrg                  Determine the gene annotation package.
mle.gene_summary        Gene summary table in MAGeCK MLE results
noEnrichPlot            Blank figure
normalize.loess         normalize.loess
rra.gene_summary        Gene summary data generated by running MAGeCK
                        RRA
rra.sgrna_summary       sgRNA summary data generated by running MAGeCK
                        RRA
sgRankView              View sgRNA rank.
