a922f2544b436d4baea5537dd3cd5354 *CITATION
4bc3514f9a2697bf652053288676b9de *DESCRIPTION
e5ab8fc36593747faeecbb1631bab616 *INDEX
672bf767a0a47f922af6bfc60dfdc6f3 *Meta/Rd.rds
56db4f0c95540042696e64651a0ed496 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
70262e03e1e27e0db852a87b7c283a5e *Meta/hsearch.rds
40f326d2e2da1bcadaa35b567850cef3 *Meta/links.rds
bc25a0dbbf5b89386df9f1bea334a305 *Meta/nsInfo.rds
b232e5e3dbca6ffe08bc99706738fbdf *Meta/package.rds
f5053eb45fe0e68073ffcabd9e4551bf *Meta/vignette.rds
861641a6de00d3a8bcf1b6ddae8b28a1 *NAMESPACE
781899a06acaaaa8596c45d1f240e9a4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/LOLA
2e5293b571b27bc26ec453d24140a0ba *R/LOLA.rdb
4689ba2f885da583ae738c7770d85c91 *R/LOLA.rdx
0defdf6d57daf84628f1f4746e5c433e *data/sample_input.RData
4143de810969370e9d4dde813314c121 *data/sample_universe.RData
77479d855769a35d74a7a4ef23809d25 *doc/choosingUniverse.R
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f7ed52463d724704fbb76d8f49b35b10 *doc/choosingUniverse.html
10635777aed086ae00d20560e01b4f44 *doc/gettingStarted.R
f203a26bdd7139fe5360f13486af09d9 *doc/gettingStarted.Rmd
562136fcffdee7b404fc1625a690e7c1 *doc/gettingStarted.html
85222a6636e14ddad8fb7579293991a2 *doc/index.html
4282708ee652a1997cef00080bba8653 *doc/usingLOLACore.R
09247d5a0ee802b06a452dd4a2d9f05e *doc/usingLOLACore.Rmd
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8a0e9d873cc0409b0ca4e83103a458e4 *extdata/examples/combined_regions.bed
0abeb2e38c96db3c248da710a90ad5c4 *extdata/hg19/ucsc_example/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/hg19/ucsc_example/index.txt
2efe7d09742fbd7d5668dcd0c8d15db3 *extdata/hg19/ucsc_example/regions/cpgIslandExt.bed
c91cf10ca317235a54ff5f26c2ddb51c *extdata/hg19/ucsc_example/regions/laminB1Lads.bed
77a3e268a8d6bf32613d5cfd46328eef *extdata/hg19/ucsc_example/regions/numtSAssembled.bed
b81ae934b502bda2ec59f31be5ee7675 *extdata/hg19/ucsc_example/regions/vistaEnhancers.bed
0d6aacd8d87eea2c5b1ccfc09971d561 *extdata/hg19/ucsc_example/regions/vistaEnhancers_colNames.bed
59cd3432078d90b537ef01021a9de7af *extdata/hg19/ucsc_example/sizes.txt
0abeb2e38c96db3c248da710a90ad5c4 *extdata/multi/collection1/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection1/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection1/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection1/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection1/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection1/sizes.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection2/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection2/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection2/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection2/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection2/sizes.txt
ef69bcd9775360a263093ba83f63a6c9 *help/AnIndex
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412b3ff60547cde25b2a0be751be342d *help/LOLA.rdx
5ed5c8dc097ecf04c2b4a1398f6222a4 *help/aliases.rds
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50fe472a3c238c588951d3990ad6ff86 *help/paths.rds
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4cef9666becaac38e96fd338754b20e4 *html/LOLA.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c54bc6babb7479523ef1c4fffb4b12b2 *html/buildRestrictedUniverse.html
4df73f7b9b5983a1304f63c4d49f3406 *html/checkUniverseAppropriateness.html
bcb825db6aa604afce6b0a43b6532163 *html/cleanws.html
002ee371ca469f83707cbb293fd0c028 *html/countOverlapsAnyRev.html
71e1676a4c3790d49e7306f010a7e5d0 *html/extractEnrichmentOverlaps.html
7627f98dc781bbb5c552b333e9c1dc48 *html/getRegionFile.html
66e88518b5e06f84490aec480499153f *html/getRegionSet.html
cead540f575a2383086f820e8765ba04 *html/lapplyAlias.html
5e26194fdfc7c9b0e06523b40b74f109 *html/listRegionSets.html
fe8882c7fd1bbd8a79a28b637b8a4d46 *html/listToGRangesList.html
58494149c5d8418e602ee19a6fcff5cc *html/loadRegionDB.html
f7c7eec072fd2cdc36807c2e46c494f9 *html/mergeRegionDBs.html
5d8581964910aacc8975ef9646b1c7d9 *html/nlist.html
c62126ab7d9e78bd48a1b77cb5cb327a *html/plotTopLOLAEnrichments.html
7d31963b2062abe9c9813feec4fb4238 *html/readBed.html
329eb2e4a0a64264ce974a45c81485a8 *html/readCollection.html
de8394090207d7ef62223a4e1ef34f47 *html/readCollectionAnnotation.html
86c730b0d33410b2b1187f25c45777ed *html/readCollectionFiles.html
b78b5b2ed88dba03d58a38d37302c766 *html/readRegionGRL.html
f7b187be473b416e2847e7fc88beb357 *html/readRegionSetAnnotation.html
41b23abd64fd012396b3faf5b863de5a *html/redefineUserSets.html
95e8621a5db41cb0bf21cc32e937bd3f *html/replaceFileExtension.html
95e786a2b904bb797ad8966fc63842a9 *html/runLOLA.html
958be3fd2fc9f0b40e20b21697c78946 *html/sampleGRL.html
17e4c51815e91ecca4ca9767f2d3017c *html/setLapplyAlias.html
c30eb1adc4c5f360401ce0e079274d7b *html/setSharedDataDir.html
3588c630be1c4624258f99a49a139caf *html/splitDataTable.html
431015007d84a15fd8e9fd184603f26b *html/splitFileIntoCollection.html
7700f3c7588d6a80bc0bd40a80f01c27 *html/userSets.html
8e87e3eecb150240c0bfcafa4d068aac *html/userUniverse.html
8c7246bc920a3b4c418660cc97484bba *html/write.tsv.html
2ca9a10ad633427a3666935c77d81d1c *html/writeCombinedEnrichment.html
42afa5448005fa150de3dfb807c743b7 *html/writeDataTableSplitByColumn.html
6662a2735721f99529114c9c0c1a95e4 *scripts/LOLA
2197004cbfb72f0b77fb1fafec0c6bdd *web/index.html
9d6c306930e625fdd0c9fd13c2c7ffdb *web/webComponents/ajax-loader.gif
592477d76c8e6a9898b729f9608becd2 *web/webComponents/d3.min.js
d307496efe5fbac7d5164c5ef8536971 *web/webComponents/gridstyle.css
