polishCPs {InPAS}R Documentation

polish the searching results of CP sites

Description

remove the multiple positions of CP sites for same 3UTRs and only keep the best CP sites for proximal and distal.

Usage

polishCPs(CPs)

Arguments

CPs

output of searchProximalCPs or proximalAdj

Value

a matrix with columes: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"

Author(s)

Jianhong Ou

See Also

CPsite_estimation, searchProximalCPs, proximalAdj, proximalAdjByPWM, proximalAdjByCleanUpdTSeq, PAscore,PAscore2

[Package InPAS version 1.14.2 Index]