fisher.exact.test {InPAS}R Documentation

do fisher exact test for two group datasets

Description

do fisher exact test for two group datasets

Usage

fisher.exact.test(UTR3eset, gp1, gp2)

Arguments

UTR3eset

output of getUTR3eSet

gp1

tag names of group 1

gp2

tag names of group 2

Value

a matrix of test results

Author(s)

Jianhong Ou

See Also

singleSampleAnalyze,singleGroupAnalyze, limmaAnalyze

Examples

    path <- file.path(find.package("InPAS"), "extdata")
    load(file.path(path, "eset.MAQC.rda"))
    tags <- colnames(eset$PDUI.log2)    
    res <- fisher.exact.test(eset, gp1=tags[1:2], gp2=tags[3:4])
[Package InPAS version 1.14.2 Index]