14ba669b32b304c4bed6f25696186015 *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
7fdc014998e1afa5d4ae767efb73bcb5 *Meta/Rd.rds
7d0c58a285ca6921e2940ad188de80fb *Meta/data.rds
598e05906c76ceab0d9ec8ecaf8877bc *Meta/features.rds
e229f5481fb4b1d0d378149166f40186 *Meta/hsearch.rds
8085e5c766a9c39fa8d0f4561426d99a *Meta/links.rds
a23d78de6e02bcfe85d9caec6590e910 *Meta/nsInfo.rds
2d592e3973c0127f68bb2a957507bd07 *Meta/package.rds
073563895091dd96613876118d97b0cc *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
52ed3244ab049c02ed0d51a37739aa08 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/InPAS
1e181a404713ad12f0731564f0c5f243 *R/InPAS.rdb
d2f6cba327b6ef75b577996840280578 *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
5b81273fb6b03afdd0406eacb5f0c13d *doc/InPAS.R
33b70e8a2b37ca7d64c855a67f30a83c *doc/InPAS.Rmd
59e4f1df0197b3d490eab420129ebc0a *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
4e03cd0c91d4c60b1fe09b64220ab4d9 *help/InPAS.rdb
721ebeb69ca5a739afeca856fdfce6aa *help/InPAS.rdx
413608803888efa3f3532748e0f48817 *help/aliases.rds
622dff463547f291c026519294e592d4 *help/paths.rds
559d6eeadd51d41b239df37cb5b02df5 *html/00Index.html
3e67f0a0a3e9622ebc32b93e037d3a0d *html/CPsite_estimation.html
35cf5f70dd67eb28724bc043ef233f3e *html/CPsites.html
b2eea51e90bb99a06fedf098dd0824d9 *html/InPAS-package.html
cd389adeb049e66dd265eadb30bb1da6 *html/PAscore.html
8f35e903ad5bb523d0884325f3259afe *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7fe97455d817e94f10037ba42f54e908 *html/UTR3TotalCoverage.html
1efe8d9965bb4aad936886e122cc230e *html/UTR3eSet.html
efaee269136f972272e9250f658a50b9 *html/UTR3usage.html
be1a304949b56bd97deb6880178701e5 *html/covThreshold.html
83639886eb64e8d8ce2a43c119c1d9bd *html/coverageFromBedGraph.html
b23eea7c0a6a8f486142b4dab9d77275 *html/coverageRate.html
891fc4707ae137a03a919535f28b50a3 *html/depthWeight.html
58b1b228af196becf41b1a7b4945b927 *html/distalAdj.html
46f13c85c584708c568a72499fa18926 *html/filterRes.html
0cff3f38d96712bf9858f6ea1827697d *html/fisher.exact.test.html
cb0788c2f17756d98776861f239bb2dc *html/get.regions.coverage.html
89447a769fbd025d88e8b97621db5717 *html/getCov.html
1ccc218edf599490661f202c9b7af26b *html/getUTR3eSet.html
f1f7eade6789828fbed82c2060646d92 *html/getUTR3region.html
325f3ab4b4751ec1772691ad8b762dda *html/inPAS.html
2b0dacc5520aec2dcc64c7372579b943 *html/lastCDSusage.html
6df0d19089c0089eae6578e434793240 *html/limmaAnalyze.html
c9102f42c02586fbe2cbfed312efe3b0 *html/optimalSegmentation.html
754ee4228fa76b8681f8e3b64f183ba8 *html/polishCPs.html
4d95117afeb0bf5868bcd4512d9cedd8 *html/prepare4GSEA.html
b84e74a5592665711052eccca410ff1b *html/proximalAdj.html
7d96d877313ee1fe6f3c5290ca77d6a1 *html/proximalAdjByCleanUpdTSeq.html
9dca79776484e2aa614428379cf1c334 *html/proximalAdjByPWM.html
2aafc7dd1ee5bedeaec8eb34a802bcca *html/removeUTR3__UTR3.html
682260f028efe7ba6cc443601011925b *html/searchDistalCPs.html
b398c48c764b36f5f986e0e9c837508d *html/searchProximalCPs.html
d2c6025cdb8efe97122b6bddccd30e26 *html/seqLen.html
65978468b03b1349cb538b9a595438e6 *html/singleGroupAnalyze.html
525d09543fcc0409749e5a23eb903f3d *html/singleSampleAnalyze.html
1f154989c4d51b04c4e4a7ef24f585a1 *html/sortGR.html
24a193a0efdf38a6bae4ca0c076f3e74 *html/testUsage.html
673b9a4ef078d739336c8d24e4abb49f *html/totalCoverage.html
f8cb1ce1bb4a30cdbea719da60b172e2 *html/trimSeqnames.html
3940a8409c8bc6f4d8fb6477521831f4 *html/usage4plot.html
44f70897d0b6662ef19b0e2cbb14e20d *html/utr3.danRer10.html
8d6bd995cb466f3c159c63a9b89ada14 *html/utr3.hg19.html
29df0559632d2a6c9a43a5f5b1d7e1f5 *html/utr3.mm10.html
520b819ba9f01b75e0cf14a693ba66b1 *html/utr3Annotation.html
65702c5eb9ac02c50992812887f51d5f *html/utr3UsageEstimation.html
fc257d98236c0085fd3be18bd02e2aa3 *html/valley.html
67d320358d9d4c7c83f86fec4473d453 *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
