| Bootstrap | The Bootstrap class |
| Corr | The Corr class |
| CorrData | CorrData class |
| DataFilter | The DataFilter class |
| Display | The Display class |
| examples | IdMappingAnalysis sample data... |
| expectedUtility | Expected utility of an ID mapping, ID filtering, or other bioinformatics data preparation method |
| fit2clusters | Flexible two-cluster mixture fit of a numeric vector |
| IdMap | The ID Map class |
| IdMapBase | The ID Map base class |
| IdMapCounts | The IdMapCounts class |
| IdMapDiff | The IdMapDiff class |
| IdMapDiffCounts | The IdMapDiffCounts class |
| JointIdMap | The Joint ID Map class |
| JointUniquePairs | The JointUniquePairs class |
| Misc | The Misc class |
| Mixture | The Mixture class |
| Subset | The Subset class |
| UniquePairs | The UniquePairs class |