251034ab906e96b2f49f0386bf1d99be *CITATION
027eaf74fda1ec9d3e5178c01a8a6a6d *DESCRIPTION
39e9cb440f0c2e0979f545f6b5724fac *INDEX
55dc7912ab79bd046ad463fabc3b0fd0 *Meta/Rd.rds
4702d4f369305c603f106840fb92c139 *Meta/data.rds
598e05906c76ceab0d9ec8ecaf8877bc *Meta/features.rds
c5ae5925ee05d6085ab00ae3c8190d78 *Meta/hsearch.rds
81ab2ce123239135688a820907095145 *Meta/links.rds
ceea9f144f7a2531d36b8d3f2e76ad64 *Meta/nsInfo.rds
c23b53464f265642c1f0838b248baba6 *Meta/package.rds
96d8689efe655af774f0b62a77828b87 *Meta/vignette.rds
b786499c497b8178c22d513e8fb5367d *NAMESPACE
340ba11faaf3d202f0b0f7fec44b9867 *NEWS
25b3221358a7d45c99ff0813ff15ed02 *ProcessingRateDelay/server.R
5e4e66c4a7019a0be6973f5be62867b6 *ProcessingRateDelay/ui.R
5932464e8bd165dfba2b1a38852b08ab *ProcessingRateDelay/www/gif.gif
ebf0fc819595d631b8bf280c4b049940 *R/INSPEcT
8a399594d05d361b9a69b6a30257a932 *R/INSPEcT.rdb
85b7dfa2e041b26c61141c5be7aaae3b *R/INSPEcT.rdx
abceed457294056c8c9c19605ddf9501 *RNAdynamics/server.R
6233fee49ab0ca9c1834a36a22794b4e *RNAdynamics/ui.R
5932464e8bd165dfba2b1a38852b08ab *RNAdynamics/www/gif.gif
8ed831e685d71e27553395b8f77c1e32 *convert_ids.R
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
125a7b58cb4c7458a6c41333128e22d3 *data/featureWidths.RData
7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
0e0f0de2c0aaf4beb7eb9746e7026653 *data/matureSim2replicates.RData
58c8d2043e26afa5d526a956ccae58e6 *data/matureSim3replicates.RData
4051edfbb7c67f9209bea0939da7c107 *data/nascentSim2replicates.RData
1184ff5dea32e6f5464287e2eeecf463 *data/nascentSim3replicates.RData
3fb0feed4b2ecb19c0b75caff236e098 *doc/INSPEcT.R
e4d7e37a8a06a1ae9f2f31160207d083 *doc/INSPEcT.Rnw
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79b3153cd794e30c2f1e4b3222ec09d4 *doc/RNAdynamics.R
0d18a8e1e199794df53e418445b4913d *doc/RNAdynamics.Rnw
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53f5f80b4e2ba7cd41e591ac290ab332 *doc/index.html
66ac71c995262c4386e490ed9ec34690 *extdata/bamRep1.bam
73dc8a7014a13a16520e377e718b5fbb *extdata/bamRep2.bam
29ca188315fe36e861e786a499a1b482 *extdata/bamRep3.bam
6da0037e8c472f33092d506371ef4627 *extdata/bamRep4.bam
ca8709a98b6bde74de54497188175a5c *help/AnIndex
677a6b963279c7344e0beb062587814e *help/INSPEcT.rdb
1583856185d3e77913b430f985ee20b2 *help/INSPEcT.rdx
b1311e9c032008cb383019f538924780 *help/aliases.rds
488531b9dcceb17903fadd915cea901e *help/paths.rds
d41460294f3e5cb0cf7b3422250304bd *html/00Index.html
38990a4d6d19827a81e6eb186e6dac60 *html/AIC-INSPEcT-method.html
2958ef37dad0516fcb461c5aff64294c *html/Extract.html
f92fe7f01bd8e44eb4fb6be0d3e5d2c7 *html/INSPEcT-class.html
2237151beedc7ff4354a86679c01c646 *html/INSPEcT-shinyApps.html
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63a9db7ad9734d4fafae99779d663675 *html/INSPEcT_model-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
48939d6846515faf5d1aee99f3bbcf18 *html/allcounts.html
55b951eb211e34e2aa396367c30f2c70 *html/chisqmodel.html
d14c72b3ada1484b9f44fb4faea04655 *html/chisqtest.html
9852975eeb37d5f80a53a53c95ccbcaa *html/combine.html
68d48d3598726c8a79d9591260d291d6 *html/compareSteady.html
c622eeb53373381f4a5774676ad4ce0c *html/compareSteadyNoNascent.html
549f772738002212fa3294b0cecaac70 *html/dim-INSPEcT-method.html
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8c844ad3c99803247856ae445aa6fe48 *html/getModel.html
d1bef9fa8444461d3167c7d4a63864d3 *html/inHeatmap.html
7aad82c80449fca022acfb7cbb594916 *html/labeledSF.html
111f4a03eb2c1081484bc23078105759 *html/libsizes.html
9b21829441fc5bbbd7b8e95cf4108206 *html/logLik.html
8ab3f26789a6b6e5afe23f9d66ac6dba *html/makeModelRates.html
e7ba3bf58aaefa077605fa4326e98c5c *html/makeSimDataset.html
32c21ba89eea1d852cfadd37557d8940 *html/makeSimModel.html
2f9e6d411cca481b1c032c6defe35311 *html/modelRates.html
45c1bdac4f72f4545969dbb3f464b0f0 *html/modelSelection.html
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55f9e94dbe5a5570e2b9f769e5b70d9f *html/nGenes.html
ae8928dda4deb398e86b4d04d59fa9ef *html/nTpts.html
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1e6997b77e61d13d3091ac03cc50a27e *html/plotGene.html
4a60db809f7e647764d6f14cbc4129dc *html/plotMA.html
661a0fb711c1c2e8ef1acfd28ea6924b *html/processingDelay.html
40e0d75e9d6c2b9691ee3b795998718b *html/quantifyExpressionsFromBAMs.html
65dcaa7b4f587a9140b77ee615ced7f5 *html/quantifyExpressionsFromTrAbundance.html
4e179c6ea67150bcc2c9a5ddbb22ef92 *html/quantifyExpressionsFromTrCounts.html
6f1e2663a705b329d1af3f7aa9ad596c *html/ratePvals.html
5236a984ddc918fe25697aa36746a2e1 *html/ratesFirstGuess.html
5056afdf9e6cc91bcc3777d885cbb3b8 *html/ratesFirstGuessVar.html
cd45914fc472cd6de9356bd68abbe5a3 *html/removeModel.html
bb7e60528681cd79edc77687c6eaf90f *html/rocCurve.html
71dc7dbbde432592ec258fd9313eaa93 *html/rocThresholds.html
0839b5fccd26fb8ae596c765229d51b2 *html/sfPlot.html
fd55d3f9efb8f162a717387909b648f3 *html/simData3rep_Nascent.html
02ffc5be5812d88961105aea7076bbdf *html/simData3rep_NoNascent.html
18720824cefc06c03607e935b902fd37 *html/simData4rep_Nascent.html
b3493a5e9b8ec1b071c3c61bc5167192 *html/simData4rep_NoNascent.html
7b9e695caf55ab2e86cf0aadc4a080cb *html/split.html
2cf62dab9710a838e9a712773c519123 *html/tpts.html
6f0efd9b380f0e8f0ee1afcee8f3b918 *html/viewModelRates.html
860c68c29a725b1b9a25f47e0b036028 *nascentInspObj.rds
1ce6b3cc929f0d15e72bbbd62978fc01 *nascentInspObj10.rds
