makeGSEAplots {HTSanalyzeR} | R Documentation

## Produce GSEA plots

### Description

This is an internal function.

### Usage

    makeGSEAplots(geneList, geneSet, exponent, filepath, filename,
    output='png', ...)

### Arguments

`geneList` | a numeric or integer vector of phenotypes in descending or ascending order with elements named by their Entrez IDs (no duplicates nor NA values)
`geneSet` | a character vector of gene identifiers of a gene set
`exponent` | a single integer or numeric value used in weighting phenotypes in GSEA
`filepath` | a single character value specifying the directory where the GSEA plot will be stored
`filename` | a single character value specifying the name of the file where the GSEA plot will be stored
`output` | a single character value specifying the format of output image: "pdf" or "png"
`...` | other arguments used by the function 'png' or 'pdf' such as width and height

### Details

This is an internal function.

### Author(s)

Benilton Carvalho, Xin Wang

[Package HTSanalyzeR version 2.34.1 Index]