KeggGeneSets {HTSanalyzeR} | R Documentation

## Create a list of gene sets based on KEGG pathways terms

### Description

This function creates a list of gene sets based on KEGG pathways terms. It is species-specific, and returns a list of gene sets, each of which is a character vector of Entrez gene identifiers.

### Usage

    KeggGeneSets(species="Dm")

### Arguments

`species` | a single character value specifying the species: "Dm" ("Drosophila_ melanogaster"), "Hs" ("Homo_sapiens"), "Rn" ("Rattus_norvegicus"), "Mm" ("Mus_musculus") or "Ce" ("Caenorhabditis_elegans"))

### Details

This function relies on the following packages: GSEABase, KEGG.db.

### Value

a list of gene sets, with names as KEGG pathway IDs. Each gene set is a character vector of Entrez gene identifiers.

### Author(s)

Camille Terfve, Xin Wang

### See Also

`GOGeneSets`

### Examples

    library(org.Dm.eg.db)
    library(KEGG.db)
    DM_KEGG<-KeggGeneSets(species = "Dm")

[Package HTSanalyzeR version 2.34.1 Index]