76b1e0277cdeca293af92a8fedcf9a45 *CITATION
30fc496f9e4578868d6fc6f77d01640d *DESCRIPTION
e28d972269a8009e8470b5f2170af6bc *INDEX
0495583fe246e0e80a5a8d691855084a *Meta/Rd.rds
d2c6b1259b6d0841cb2a67bb18705418 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
068fa5fd98fe47c1f080ebd93da57957 *Meta/hsearch.rds
28195c4f9c72686b829a6f9d529fec85 *Meta/links.rds
5fb07780666a3656bbbe18f52d4b6746 *Meta/nsInfo.rds
b782b802e6e6354397d10d6de9c00941 *Meta/package.rds
35bb4c9b152c3fbe01b79ee384cbed22 *Meta/vignette.rds
79718fdf86de9ab7e626e590ba192864 *NAMESPACE
b83eae0cf23be06b9ff4e028d09f6383 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Genominator
afdfaa8326990b55a8ba1a8792990420 *R/Genominator.rdb
fd1def94e6df3bc46be1613ae154dbab *R/Genominator.rdx
fe2019eaaec3238deec714a7353433d1 *benchmark/idxTiming.R
92ffb0897b6ff67bf0d1970dc8427350 *data/chr1_yeast.rda
61a467dd982b7017a5fd9df7b4698b8c *data/yeastAnno.rda
9f6389f71fbffe74ddc5560740433b55 *data/yeastAnno.sources.rda
eee9d82b7d329f9d1fc6c3687a9ae6ce *doc/Genominator.R
97ca8f5c7a6831cfa5637f89910861d6 *doc/Genominator.Rnw
555383c546d581ab6ded34ce793a91ff *doc/Genominator.pdf
584fac6f20fa92d02245ca34bf0fecd1 *doc/index.html
6d7a3961cb47d0368579b795c355015b *doc/plotting.R
ff6a3c5cbf66cd9c1efff3c23f777d0a *doc/plotting.Rnw
3795fdfdf26eebbc45d68e3f41b459cc *doc/plotting.pdf
41c1496165b1f5cbd57d872998a08356 *doc/withShortRead.R
596c1fc9a785f563ef59eb35f5815a90 *doc/withShortRead.Rnw
f870c3e24900af07e3f097a6f8df536a *doc/withShortRead.pdf
a7e039d9604854b42b3034c0308be5a1 *help/AnIndex
c19a5262e981716b54aa51fa3bbbf9b8 *help/Genominator.rdb
7245c805c3ac0effe3b9fec72c688b78 *help/Genominator.rdx
348a601ae78210875dd3da682c7b2726 *help/aliases.rds
d730ecaca8aef66f7c3d6918c11bf52c *help/paths.rds
4f16c3a9393314c3962bd0604da143b3 *html/00Index.html
ca086405fb73fd7cd131e97a3729690a *html/ExpData.html
1940d9db605ae54429afa4e88cf05661 *html/Genominator.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4c8c704a70392ba1b4ee5cfc0726cab7 *html/addPrimingWeights.html
094f40483043c8e8dc1de08e700570fa *html/aggregateExpData.html
ec5d051c7892306a190fe36933cfc55b *html/applyMapped.html
33b95cb12851150de29fd4d2819e8175 *html/collapseExpData.html
8a86ceaf6610f0d4a88ad9f64e061401 *html/computeCoverage.html
66c57ded66a2fde95301b7b7afad41ac *html/computePrimingWeights.html
b00161a4949ea325e712807438c488ee *html/getRegion.html
07acf5a6cbff71c6fb5d6565a2c5608e *html/importFromAlignedReads.html
fa00157fd8d7655069c2227db716df3c *html/importToExpData.html
2057dda7be5af09535f56c105eba3c73 *html/joinExpData.html
a763d8e2b566e4f22929514214c9cef9 *html/makeGeneRepresentation.html
0bbd20515cb267304d06803a942f8c11 *html/mergeWithAnnotation.html
efd973b41ef57ccaa074684df903429a *html/plot.genominator.coverage.html
5102124852ed59f9eadd679ccbc48a6f *html/plot.genominator.goodness.of.fit.html
663a4954a47a0b9e2124439822f81af0 *html/regionGoodnessOfFit-methods.html
bdec5307ed83a42bcf2af1a95ab3d21f *html/splitByAnnotation.html
b0eafa845141c1bc49fa557215b1a68c *html/summarizeByAnnotation.html
cfd673bb62c80bdba73bb8593aa88144 *html/summarizeExpData.html
b0b7ea1eb0e9cc2bd17b3000bcf3a92a *html/validAnnotation.html
eea0963cdddda3381a4f2ec45f37e285 *html/yeastAnno.html
862763ecbcbc50dd334a17ec6bb2fd8a *sample.db
7e049f5b6c468d78ad7fa82b55affaa5 *scripts/consistency.txt
a015d1b9430e4a51085982e200c24fca *scripts/import-marioni.sh
b2dfdbaa5c85151db09947ab2550a468 *scripts/pipeline-marioni.R
ba96868b64604b6ba7b178a06503086e *scripts/pipeline-marioni.sh
a0bd50f01f6e2bfe251cea9c72983eaf *scripts/pipeline-yeast1.sh
53a9b60c55b249540ee08fb72eb2721c *scripts/pipeline.sh
0c0efe8a6c41be6a96d496a4b03ecf34 *scripts/reshape-marioni.pl
d204b6b7dfaf9baf5a6c65234e75e05d *scripts/reshape-yeast1.pl
c450860e7db68ed870a96137487b4bdd *scripts/sqlimport.sh
d9fefd32f56e205c966693c1e115c275 *scripts/temp.R
