f3f5bac2ccf52ba3bedb72098ad04624 *DESCRIPTION
6c1d9521ed8c4849661b87dc9e098636 *INDEX
a1b1a0d538eb6fc65c54ea58bf5858e2 *Meta/Rd.rds
4537dbe5b2176f18cf5a2c85fe1d7adc *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
38c25834811c8454c94cbf559f47e4e0 *Meta/hsearch.rds
b97029b0b299fa0c4b31f9fb2eff5d0d *Meta/links.rds
7c6cf57e5d2059cae479c0dae9de9ec6 *Meta/nsInfo.rds
10c244718d4346192d19749531fb39ee *Meta/package.rds
9060623e8fee7c9435ace5604138e432 *Meta/vignette.rds
12623801abce9e26615688a7b1117a4b *NAMESPACE
72ecd186ff9413b48ea2929bb815ed34 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicInteractions
b8e80abe604563d51ee5b5a1ee06231f *R/GenomicInteractions.rdb
a1fa29afbbadc301bc40651952270010 *R/GenomicInteractions.rdx
398558e5248b1a617c42f5fe6c1ad024 *data/hg19.refseq.transcripts.rda
d976d748baf9338534b53095b4433f0f *data/hic_example_data.rda
e738b2c892fd3a5023e8d0a9cc9dc787 *data/mm9_refseq_promoters.rda
f3be44c2045c0287f3e042d3e80a710b *data/thymus_enhancers.rda
51301553b7a4b5c297cfc3d0af8b9020 *doc/chiapet_vignette.R
045bb842890ec6b7d52f73ecea786979 *doc/chiapet_vignette.html
1aec73444f76ab4e96307fc29f591682 *doc/chiapet_vignette.rmd
721da4415671f7430deb17fbdd98c104 *doc/hic_vignette.R
c0f756d66f273869519f0c22efc34230 *doc/hic_vignette.Rmd
f842fa58e09c52fc91b7d3c340f85a9f *doc/hic_vignette.html
9597385754aedab651758fc993b6d01e *doc/index.html
8f4732d26550d64a9dee4252097063a1 *extdata/Seitan2013_WT_100kb_interactions.txt
adc8c65e7510394df1e46053c58796db *extdata/k562.rep1.cluster.pet3+.txt
8438c331772396c12ca39a1657a5baff *help/AnIndex
7492d634ca2e9824cd920207c9859c40 *help/GenomicInteractions.rdb
cadaa7a9319a06880b40d86128af7625 *help/GenomicInteractions.rdx
6e066b04f96a920adcd2bc30dbbd7b26 *help/aliases.rds
329fa18c5b0aa1391288b08ba08d27e1 *help/paths.rds
bec39538a758fdceea17d7d9853f7fea *html/00Index.html
75369358532b963a1dbd7bab564a9830 *html/GInteractions-subsetByFeatures-methods.html
15c70806e303a2abbcd7ff3636d2d63d *html/GenomicInteractions-class.html
e83b11e2ad8cbecafbced4006ec959cd *html/GenomicInteractions-package.html
eb8b7ce17832a81c3b098b91368c1b7b *html/GenomicInteractions.html
254fe6019caac277ebdc6bcd17ec3f06 *html/InteractionHelpers.html
bbe286b1a4b7a3462ba81cadde2e2176 *html/InteractionTrack-class.html
7e4e034248ea75d5308febbb267c5843 *html/InteractionTrack.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d734b7108878b4e2a0114c205a31baab *html/annotateInteractions.html
ca94308e0f9c7f0ee28b5dc56b3d75a2 *html/annotateRegions.html
111c004a89060926d28ca5d0ab8621d7 *html/asBED-GInteractions-method.html
6afd90358e5635278e11b9474c2bffac *html/availableDisplayPars.html
122ac3f193f200d97942e532e1c7fddc *html/calculateDistances.html
2aef29b8791ab0b9173d6b678d170288 *html/categoriseInteractions.html
fd90ff12cf2153b404ca4d003a094ab3 *html/countsBetweenAnchors-methods.html
f65feb51cc0f07a1751a3aa3bb781a3f *html/export.bed12.html
f59c0bceae298710efaad757b71abb13 *html/export.bedpe.html
766461a6b294aa6471181ad79eef9127 *html/export.chiasig.html
74ac6d13000bd7871339034f394cf5cb *html/export.igraph.html
651253000c22cbab9bc484b915986193 *html/get_binom_ligation_threshold.html
735dd5917a922d6479254821b94bde38 *html/get_self_ligation_threshold.html
821c0e73a1ade515aa94eeceb49778f0 *html/getters.html
806c0cb9a4c81785dd1a7480a348399c *html/hg19.refseq.transcripts.html
8cf79d7e17398af745176dfa314228f2 *html/hic_example_data.html
91cb0653a221f9d886bb497d1bad2f63 *html/makeGenomicInteractionsFromFile.html
15b9db076a87205316b61cf6054f0139 *html/mm9_refseq_promoters.html
8891d7a811999226e896e7938bb0c579 *html/plotAvgViewpoint.html
940da5188ee3508af9964b4c0504f15d *html/plotCisTrans.html
93679030b2f5923cb62938ad3376fd63 *html/plotCounts.html
e7b791587192e14ca1596001408bc5df *html/plotDists.html
c2d41465f25f8381c4fc05b54451266f *html/plotInteractionAnnotations.html
022eb188a536c0b4dc8f6a3496f177f5 *html/plotSummaryStats.html
519d1e584e1ab0ace366a35c58f5a6ca *html/plotViewpoint.html
287f470f2f30ccd5ec63405b35940b30 *html/removeDups.html
4874a4e30013eb32ae98926d4d16b595 *html/resetAnnotations.html
85deb91b908f09d254d361918239bb7e *html/sameStrand.html
a98213f025e587e1d769257c16b51b5d *html/setters.html
59bba7c48d54d0800f6f9d2a6f91b09b *html/sum-GInteractions-method.html
c0805285491595af2b5fca1f98629885 *html/summariseByFeaturePairs.html
2d2464f718851acff12659c0de95666d *html/summariseByFeatures.html
7d62969f2080977c0b22d0648f854589 *html/thymus_enh.html
f64c5026369d7f8663f5398820c228d8 *html/updateObject-GenomicInteractions-method.html
655f30e6ab41c5df8af9ddb935ef9733 *html/viewPoint.html
