R: Coordinates class

Coordinates-class {GenoGAM}

R Documentation

Coordinates class

Description

This class mainly exists to overcome the lack of long integer use in R and the IRanges class in particular. The object is basically a restricted DataFrame object, with a few custom methods to mimic the behaviour of IRanges.

Coordinates is the constructor function for the Coordinates-class.

Usage

Coordinates(start = NULL, end = NULL)

## S4 method for signature 'Coordinates'
length(x)

## S4 method for signature 'Coordinates'
nrow(x)

## S4 method for signature 'Coordinates'
ncol(x)

## S4 method for signature 'Coordinates'
start(x)

## S4 method for signature 'Coordinates'
end(x)

## S4 method for signature 'Coordinates'
width(x)

## S4 replacement method for signature 'Coordinates'
end(x) <- value

## S4 replacement method for signature 'Coordinates'
start(x) <- value

## S4 method for signature 'Coordinates'
width(x)

Arguments

`start`	The start vector, must be of same length as the end vector
`end`	The end vector, must be of same length as the start vector
`x`	The Coordinates object
`value`	A numeric vector. For replace method in 'start' and 'end'.

Value

An object of class Coordinates

Methods (by generic)

length: The length method
nrow: The nrow method
ncol: The ncol method
start: The start accessor
end: The end accessor
width: The width accessor
end<-: Replacement method for end
start<-: Replacement method for end
width: The width accessor

Author(s)

Georg Stricker georg.stricker@in.tum.de

[Package GenoGAM version 2.0.3 Index]