0f13879758690de13e08cdbbb64322d7 *CITATION
85270e2b72f69463e7639f4902e1a444 *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
b0e7c6f81f422b5183d470b377bb5941 *Meta/Rd.rds
0b5de23229153453d0ce18aff5f25375 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
4ec72c468fe9113210758078042a14c3 *Meta/hsearch.rds
678bfba5acbdd493b8106640a6262913 *Meta/links.rds
997200e042c7004cce6405d8477d8dbe *Meta/nsInfo.rds
68813416776eb2cee53777a720f308b2 *Meta/package.rds
841017cdce8677da9d0ed02ca4f3227c *Meta/vignette.rds
72ee1921276696de34d6c12e559f07d4 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
364056843ef50d3deed63909f9fcc439 *R/FourCSeq.rdb
f20ac3f1020f6a61a422b00c9b44fd19 *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
2417ac37a22bc1cc547d5b39566dd8ba *doc/FourCSeq.R
d88c442490157761fcb294bb0f108775 *doc/FourCSeq.Rnw
5a1fa8d2f31aabcf633cb61b308d0ea1 *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
a3ab3b5e6892bc069af2e0d16a86afbe *help/FourCSeq.rdb
4530fe7191f81aba3f0d8a8b60fceeb6 *help/FourCSeq.rdx
06ac42fae97df2e4ecc6435278d17b31 *help/aliases.rds
80f90d17b987da18fa5d1691a60bdd32 *help/paths.rds
694490a94888ba8e94c2ca91f58aa525 *html/00Index.html
7e60c5163692e68f9d435c1f42092376 *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2406809cc47c5eb46e998e4dae05da22 *html/addFragments.html
70e6bc2e0e7b2617ee7e0a889be29ff3 *html/addPeaks.html
7ef79d2b640adfc4d57a382a3e3a451d *html/addViewpointFrags.html
b2b0d5b3c266048f06b2a4cc86b3fc82 *html/combineFragEnds.html
788e01cd5c5e9c9048d0cdc544ab5396 *html/countFragmentOverlaps.html
8417dcf73f3208bbe13fba8ca0f19979 *html/countFragmentOverlapsSecondCutter.html
153f9533d0a6816842b9120deed218a5 *html/distFitMonotone.html
4a8a2d0c9e3b1ad706e34e0b0ded9d92 *html/distFitMonotoneSymmetric.html
b7766758c05f29143e8429b23272e0fb *html/fc.html
61724c2ff0bce4c901fdd310d9194567 *html/fcf.html
422cf411c0e18707e673b7e360a69e11 *html/findViewpointFragments.html
2d0193991757d4404df5f61b912a4cee *html/getAllResults.html
272f3b1c8982828d02024c378cf5c48a *html/getDifferences.html
9d04ed968cdf75ca8eb8d321660ae83e *html/getDistAroundVp.html
b02a0cf43602b72e7d3a6212e6a23007 *html/getNormalizationFactors.html
42df61496a21fe7913a1667541f95597 *html/getReferenceSeq.html
92702544e331d7c89dfa45fb5dc8a29c *html/getZScores.html
551df66b3d3ca14c389b075b379d2872 *html/normalizeRPM.html
4eb25d7622a51bd6ea4f74e52fc51f65 *html/plotDifferences.html
bfde5b9e91f77b033b5350ba787bdf78 *html/plotFits.html
515b7d7488c9363bf67e7c6f2ff761eb *html/plotNormalizationFactors.html
536c524bb5a19f77db4aaf3409fc7522 *html/plotScatter.html
8b13439da372c52772c3ed726f91d8f1 *html/plotZScores.html
21e5825085785e15ccd96fbf5a6200df *html/smoothCounts.html
ededd17dd793c17b5dcaaed4a68004fa *html/smoothHitPerCent.html
404c3d33c5769c15d2133664c4b29148 *html/writeTrackFiles.html
