391f8a3899bc796bbed73c5b3212a2d8 *CITATION
0baa24336edf6015f933c9e481da5801 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
bfe3f1de6e5cb66e4f14e0c61ff5d46a *Meta/Rd.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
f037f39fcf9c0de8000412e9c38080ef *Meta/hsearch.rds
64931af4a3716ad849b7ed6746050a57 *Meta/links.rds
c18bbc69facccf6c8fb21aa402ab6f67 *Meta/nsInfo.rds
0f91f644acb177e7c4b0f14ae1e8b89d *Meta/package.rds
73590f8c9153766cf84b19193ea5ad1a *Meta/vignette.rds
11bec9a52fb45fc35a863eff91b538c7 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/DiffLogo
e0af1f92779d549cb756a8cbcf232638 *R/DiffLogo.rdb
d68ec89dd1c963a26da3e2d7c229700b *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
844a4860824d41aabad7114d36252c26 *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
35df7d4ccaaf72acfb21d10047a1c733 *help/DiffLogo.rdb
fe6d2fc1104e00e1b148aaa342b363ed *help/DiffLogo.rdx
ca7185e153f98d79b18e96ccb860d2fa *help/aliases.rds
d6a1157d62f2b31baab4f2b6a5a60f6f *help/paths.rds
cacd6adb238bd4c2e306060f7b907909 *html/00Index.html
24017bab1ba969eeab06035b1e92a13c *html/ASN.html
80fe35e92e668a5d117be01f100dd0c3 *html/Alphabet.html
0608fd804415c5b5c4cc1caa39a73642 *html/DNA.html
2343834f412d1b371efb4247a95f1003 *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c466cfc7bc3ced67287e19a52b44bfca *html/RNA.html
4e5b58737b29bdc51894ef6e4bd31787 *html/alignPwmSets.html
e2b45d1ff9fee9c05e1d21e71574e65b *html/baseDistributionPwm.html
c85b8550663c877052943d8baa501c83 *html/calculatePvalue.html
fc77449e87874d4787a6ad87abc5febc *html/createDiffLogoObject.html
cad8f203684ee30f422a199c2c8692af *html/diffLogo.html
e8e91db4f243374084a227e9ba522205 *html/diffLogoFromPwm.html
9dda4bb3e55afee6c7a8ae4715333912 *html/diffLogoTable.html
0cd573c3030581366b8cd918689408db *html/diffLogoTableConfiguration.html
948befd0ee182a125fb03ade5af79e4a *html/differenceOfICs.html
b916911af2c6d71acb1c5f0f6fa81d7d *html/drawDiffLogoTable.html
41b57cde4de7394ae67461c0eeb1c4d7 *html/enrichDiffLogoObjectWithPvalues.html
8aec049255d6dbf1ae852fc0a95f23c9 *html/enrichDiffLogoTableWithPvalues.html
b5cb54cdb9104bf5abe1913f03c52555 *html/extendPwmsFromAlignmentVector.html
678918981ffde44e1ab178aad5c9154c *html/getAlphabetFromCharacters.html
ce094b5c5f17e3872f62a3d45cd2b7e5 *html/getAlphabetFromSequences.html
e0fc5d1744ec3b23ad68cdc7a6cec5da *html/getPwmFromAlignment.html
272302de153218709390731f3fe066e5 *html/getPwmFromAlignmentFile.html
b34655c72a9fc2185fbcf988015ed978 *html/getPwmFromFastaFile.html
3e0e7e9513130f91920c867b187ed6de *html/getPwmFromFile.html
e7e1ba7e496851d228c0e858a8c092c0 *html/getPwmFromHomerFile.html
3737438eaf598f4a2741ba88d39a44ad *html/getPwmFromPfmOrJasparFile.html
12a614df6954653736a8474c208bea65 *html/getPwmFromPwmFile.html
f8a070283fed966a0f4481af57886a17 *html/getSequencesFromAlignmentFile.html
fb96b58588b26a962f107e05988f9fa3 *html/getSequencesFromFastaFile.html
32abf34050ecf34f2f004af4a5eb492f *html/informationContent.html
c8e8404bb779ced5a32d24195866b8b3 *html/localPwmAlignment.html
75c1a7eb4de51cf7c4a71d628fc29edf *html/lossOfAbsICDifferences.html
ff6c0516ebbbaec1bef80402d1e1d260 *html/multipleLocalPwmsAlignment.html
14b78b123220fcb74ea773b5bdfda10d *html/normalizePWM.html
2551c98dd4f9c8a12f9d6d1593f21462 *html/normalizedDifferenceOfProbabilities.html
0a942ac3e34f9d0c8248a6348a0d83fe *html/prepareDiffLogoTable.html
22154100d5861e8f2fde5fe6a46acf1f *html/probabilities.html
feb7b637a2dfbe9b50a5c799a308c1b4 *html/pwmDivergence.html
a9ead252dee762184e5386ca9c26c49d *html/pwmsDistanceMatrix.html
faace1fd2b7bb2c5d25373281168993d *html/reverseAlignmentVector.html
1a6805d7c95c3628e7981f66aa1787f4 *html/seqLogo.html
dda8133b0c4163f043940891f6bd0394 *html/shannonDivergence.html
d04338d462e7589725bbb7fc22b38a6b *html/sumOfAbsICDifferences.html
f02175645cd0e717e831ddb45186ec19 *html/sumOfAbsProbabilityDifferences.html
39ea94956b7c8566383917abdec79ce8 *html/sumProbabilities.html
108c8a6e74c6bfcdc05c1bc1e2abfdb9 *html/switchDirection.html
3708ea01dd05d6fcc1397ea58d49aa06 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
