| deepblue_tiling_regions {DeepBlueR} | R Documentation |
Generate tiling regions across the genome chromosomes. The idea is to "bin" genomic regions systematically in order to obtain discrete regions over which one can aggregate. Using the 'score_matrix' command, these bins (tiles) can be compared directly across experiments.
deepblue_tiling_regions(size = NULL, genome = NULL, chromosome = NULL,
user_key = deepblue_options("user_key"))
size |
- A int (tiling size) |
genome |
- A string (the target genome) |
chromosome |
- A string or a vector of string (chromosome name(s)) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Operating on the data regions: deepblue_aggregate,
deepblue_binning,
deepblue_count_regions,
deepblue_coverage,
deepblue_distinct_column_values,
deepblue_extend,
deepblue_filter_regions,
deepblue_flank,
deepblue_get_experiments_by_query,
deepblue_get_regions,
deepblue_input_regions,
deepblue_intersection,
deepblue_merge_queries,
deepblue_overlap,
deepblue_query_cache,
deepblue_query_experiment_type,
deepblue_score_matrix,
deepblue_select_annotations,
deepblue_select_experiments,
deepblue_select_regions
deepblue_tiling_regions(
size = 10000,
genome = "hg19",
chromosome = "chr1")