| deepblue_select_regions {DeepBlueR} | R Documentation |
Selects Experiment regions that matches the criteria informed by the operation parameters.
deepblue_select_regions(experiment_name = NULL, genome = NULL,
epigenetic_mark = NULL, sample_id = NULL, technique = NULL,
project = NULL, chromosomes = NULL, start = NULL, end = NULL,
user_key = deepblue_options("user_key"))
experiment_name |
- A string or a vector of string (name(s) of selected experiment(s)) |
genome |
- A string or a vector of string (the target genome) |
epigenetic_mark |
- A string or a vector of string (name(s) of selected epigenetic mark(s)) |
sample_id |
- A string or a vector of string (id(s) of selected sample(s)) |
technique |
- A string or a vector of string (name(s) of selected technique(es)) |
project |
- A string or a vector of string (name(s) of selected projects) |
chromosomes |
- A string or a vector of string (chromosome name(s)) |
start |
- A int (minimum start region) |
end |
- A int (maximum end region) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Operating on the data regions: deepblue_aggregate,
deepblue_binning,
deepblue_count_regions,
deepblue_coverage,
deepblue_distinct_column_values,
deepblue_extend,
deepblue_filter_regions,
deepblue_flank,
deepblue_get_experiments_by_query,
deepblue_get_regions,
deepblue_input_regions,
deepblue_intersection,
deepblue_merge_queries,
deepblue_overlap,
deepblue_query_cache,
deepblue_query_experiment_type,
deepblue_score_matrix,
deepblue_select_annotations,
deepblue_select_experiments,
deepblue_tiling_regions
deepblue_select_regions(
genome="hg19",
epigenetic_mark = "H3K27ac",
project = " BLUEPRINT Epigenome")