4ad19164b71f48a159aee0245eee9ad2 *CITATION
3cb7a55f97039b94f00a504de70ff06d *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
229a642f2bb03dacf427f132b1f2e5ec *Meta/Rd.rds
0418f864e9f2df0f41b4992466207e1d *Meta/data.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
b75a9438db21fcf9c4ca9580d41c1e75 *Meta/hsearch.rds
1fc7d03bffcbd7f9363487b66587a9f1 *Meta/links.rds
e27f1d05afa1e2767af3a42d96b1f270 *Meta/nsInfo.rds
72ebd01b7cd2c36167bdcca50c154435 *Meta/package.rds
3137d83714b219fb527de8ea558ccd1f *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
f83dd43de5453c2107ac7bb78d5bb320 *R/CrispRVariants.rdb
92e0ae8d4901378f34f4eb12eee548d0 *R/CrispRVariants.rdx
52c177671ee129997f387fb7f1922b30 *data/Rdata.rdb
7fc734e824156d5f761a55f32958c830 *data/Rdata.rds
f4dfb8a47db74f18a06619950d567cde *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
c26bf75be321965449551d4dffa6de14 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
8dbd5767540cbe76d508d192d3a356d3 *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
dcc5845212d1e1b64d1956793fb683f9 *extdata/ptena_GRCHz10_ref.rda
a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
65e86256f17de46f8c75fd5441a207b3 *help/CrispRVariants.rdb
a8e9caf6e8e31a70bf45860a12259892 *help/CrispRVariants.rdx
c3abed3c9ccc8a200ac3be7fd042518c *help/aliases.rds
6572f7c642573f2f1a4a2e0eb1627351 *help/paths.rds
f24c9b541535675a11c5bde5f16bf917 *html/00Index.html
06de27579402106818379e1df48a2d6b *html/CrisprRun-class.html
b6f005d5a1bed4ab35cebdc128e9b756 *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
09c5801299314080eb24c87424c7e760 *html/abifToFastq.html
64a0717a14eba583cae4f400c502eee3 *html/addClipped.html
51b8132eba5feb67ef65ac48e426bbaf *html/addCodonFrame.html
37d05cddb0eb5571e9b6dcfd46b57ee7 *html/alleleLabelsHelpers.html
cba449fe7bb328176b5f3676dea2e9c2 *html/alleles.html
0d04ec1019dee21f64cbe5ea14da346f *html/alns.html
48f4a2752ebe271ff56b69eda8d1746c *html/annotateGenePlot.html
f3582107b8d34cf433c91a89c6cdabb0 *html/arrangePlots.html
0d8e93c686e8d6a41e7be7161217e4d9 *html/barplotAlleleFreqs.html
e745c72c02f2c4d9abaedaea661574f5 *html/collapsePairs.html
44d1d5fec67b8fda31d4af9ac38deead *html/consensusSeqs.html
11d2b998eb98e69f1b8ead97c1886ba0 *html/dispatchDots.html
082ff0dd95eada49197dfac8cbf6281d *html/excludeFromBam.html
f15168fe8cf59350652a1a904973baf9 *html/explodeCigarOpCombs.html
466d477049950cdbf364dbcc8bc35d86 *html/findChimeras.html
465a7b245c637192595cc9c221c7386e *html/findSNVs.html
17015a73a42b909e4c724ce03d1fe694 *html/getAxisCoords.html
1e0f226f688a80ceaab0c79b963c2fef *html/getChimeras.html
f41113354d1ee4524999a9408e0718dc *html/getInsertionsTable.html
01f1f175b9335d109347f537d949d2bf *html/gol_clutch1.html
42aa606b432a8a67dc70519d515a0cdb *html/indelCounts.html
6373bf2ba0b7a83419e5a9fbe4875813 *html/indelLabels.html
efea1745b19b1076a1ee981432b8b9a0 *html/intersperse.html
00dd4fb98b0d432073b4f898b172eee2 *html/makeAlignmentTilePlot.html
4256869503b1a6fbc187d11a6918067c *html/mergeChimeras.html
0bf9d3138a44a83175acf59eb58df0b9 *html/mergeCrisprSets.html
9f01a31bbfa5f4ccfabcd406784b5d6d *html/mismatchLabels.html
9d5715846d18cf93f51d6340a7bb9acd *html/mutationEfficiency.html
02f0548116518360ff314a6500c6be2b *html/narrowAlignments.html
7f8a3f42c61541e0290ac339cb5d69d9 *html/plotAlignments.html
e7193b536621313fffda7baadb65df41 *html/plotChimeras.html
b5640559ddbee470e50f5182a07d89fc *html/plotFreqHeatmap.html
fc18e71e4c421f609f5da3a35c669fae *html/plotVariants.html
13e27fb236f1f4ec7beada9c657e5bb1 *html/rcAlns.html
755c513acdfd2e0171f30cb1fe8db1db *html/readTargetBam.html
534da8b1391837e9c0c50e0c30b090d8 *html/readsByPCRPrimer.html
4e0d07ed9b2845f5d662c6081e1a800b *html/readsToTarget.html
1175bcafba128f5b3644f17881c74040 *html/refFromAlns.html
0a3e9b89e5983ff86d0f728eb0bed693 *html/reverseCigar.html
aa30d56f72215b6893e17fd382456878 *html/rmMultiPCRChimera.html
4df4f3d3c8c9752cae1f3b870a3eab3d *html/selectAlnRegionsHelpers.html
e79557034e5cf6ab0d12ae5a8e1037a3 *html/selectOps.html
6d08722ad1fcf62336756784af99344b *html/seqsToAln.html
74c11c373f638cfaa928c4200da43b5b *html/setDNATileColours.html
b31ec5c19b6f89a7295335feec45fcc7 *html/setMismatchTileColours.html
2a02a6eb0a883a39c62e8159cf5bd193 *html/transformAlnsToLong.html
29a41b95b1a67918a1782c26c0a1862f *html/variantCounts.html
71372473e3d5934470c11dfdac9877f1 *html/writeFastq.html
