2ab94a6733195eae1c19304bbdab987b *CITATION
6f773a3665f3c46abc0deae203803352 *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
bc71f90da1fcb2a258ed64c3600b61d4 *Meta/Rd.rds
7799e4f0ce76454fce89f2fd184bc3d3 *Meta/data.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
ee79c0e4fe668b0b57d8cca34f1e8b6c *Meta/hsearch.rds
984114b910fd5d7d0384e759eab84f4d *Meta/links.rds
f870a93da7cdb3174f43452ae8cac623 *Meta/nsInfo.rds
7180ec462b5e7f3999d68ab6a4fb5c6b *Meta/package.rds
24c95a4f474787dd831622000d1b2478 *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
c765d146b1d1232590a7c25262f9fdae *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
deb2affcfd50c3d1d71ba648a6323195 *R/Chicago.rdb
08aa628385fd4e20d29e8d4674b9b0a0 *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
8457791f37ca03b3893787812c10977c *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
833e65faf10a5b24a1f100b16e683b2c *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
caf0cc65a13cbc5c2c3d151c0758467f *help/Chicago.rdb
21b946922d517448f56a032fb08b049f *help/Chicago.rdx
8f0bb9b0045bb9d82721f0f5846658e2 *help/aliases.rds
45f309425454600922070208d791057a *help/paths.rds
90cbb8548c15e9197f83e61e1f0e434c *html/00Index.html
e01f8a30b8be597d90e185e1e712b3dc *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
06bc21d29559a58c27206da514f81c65 *html/cdUnitTest.html
e60f8a82f54eb7618d773be3ef837021 *html/chicagoData.html
80b410fe7c80aad9d4bc6142730a5255 *html/chicagoPipeline.html
6f8b20b9ca799a897c87081c2ee7b58c *html/copyCD.html
cada847f6e159527b99f625e38b5eb64 *html/defaultSettings.html
499ddd1796dc56fa4fed319e3513d2dd *html/estimateBrownianComponent.html
86d8dd86947bd3a072ad6a4d04d66268 *html/estimateDistFun.html
51b9ee802858f851088473f6fcfec3c2 *html/estimateTechnicalNoise.html
00b294f5cac42092fe426a6f2941561a *html/exportResults.html
89c57f80631cad45d2d5df0bdccc1301 *html/getPvals.html
50eb693f14e956b3cb3dc95c1a16c9cb *html/getScores.html
559d25c25e2acb3b460e686e43a25b60 *html/getSkOnly.html
52f8e8ae9b949f5ac0c34ead4e545137 *html/mergeSamples.html
fabbb4b558b6291d531bad67444a5cbb *html/modifySettings.html
dc3a435929cd3522c3235fb1a93feca9 *html/normaliseBaits.html
0ad8cd08a23f8ad71e74c7bf4e7821df *html/normaliseOtherEnds.html
ac982a53ae0a6250008ea3f2c203ae10 *html/overlapFragWithFeatures.html
a2d7b9c6da875a5f40ddff14ee7afaa0 *html/peakEnrichment4Features.html
28df12dfb6bd2eadedf878c530a2e586 *html/plotBaits.html
4a3c0ef3134e9ddffa8997b8db989d33 *html/plotDistFun.html
542e6dd433663fafcce9dbb120e1ca15 *html/readAndMerge.html
e048cbb87752fcf66d4cc84471796080 *html/readSample.html
b4da7ad8b24e25faf40b9cf1e580f1d1 *html/setExperiment.html
