get.oncotator.anno {CVE}R Documentation

Open Cancer Variant Explorer (CVE) Shiny app

Description

The get.oncotator.anno retrieves annotation from the Oncotator database.

Usage

get.oncotator.anno(x)

Arguments

x

A matrix containing the columns chromosome, start, end, reference_allele and observed_allele.

Examples

exCase <- data.frame(chr = rep(10, 3),
    start = c("100894110", "100985376", "101137905"),
    end = c("100894110", "100985376", "101137905"),
    ref_allele = c("T", "C", "G"),
    obs_allele = c("G", "A", "A"))
get.oncotator.anno(exCase)
[Package CVE version 1.8.0 Index]