92c6358370dc517534345489c3f36000 *DESCRIPTION
68bb9ab215ae4b272ec27b23211bae93 *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
2fd238143680096e9ce8aea83ff70964 *Meta/Rd.rds
8269cf6f4a196a9436c4323b066a04f4 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
21eab82751c5076ad133616e06033159 *Meta/hsearch.rds
325e755ba10300497922a46fc01d114d *Meta/links.rds
7431a48c72c4a40e30978e11077c47dd *Meta/nsInfo.rds
0edb640d3c7e59f56786d3d2a5955c0d *Meta/package.rds
8f18305c72ecfb0542cd701e2f0c6ef1 *Meta/vignette.rds
529d6739f5d3e673afc9a295d7862ebe *NAMESPACE
fad59674387f98c24c21f8f0359c6381 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
cdfc819a3b4928079bf3f7ff56ae6b88 *R/CNEr.rdb
811867e33558a83f416d2522aa23b7fd *R/CNEr.rdx
a595fc03c3b3d57f048c4e21a18c7cd2 *data/CNEDanRer10Hg38.rda
85fca72fe185084dbb12393bbb56c94d *data/CNEHg38DanRer10.rda
d7aff5e8ce701e2ce81feb5ba8434b73 *data/axisTrack.rda
05e4a1691e623dbc5d5132c625c3e952 *data/cneFinalListDanRer10Hg38.rda
3e2c63d5839dce07a3f8a017924633e6 *data/cpgIslands.rda
f636989efeff6b5effb53b546919718f *data/grangesPairsForDotplot.rda
fb9424ea5abd0f82ef1105e8462b8a1a *data/refGenes.rda
9a69371c94a2e1b3c0314f8e3ceb6782 *doc/CNEr.R
2de5bf342921f97286a553613e6aa05b *doc/CNEr.Rmd
a908e8e1635959e131b3f5d568521203 *doc/CNEr.html
0f399a35cf4d483a0f0841c83e4aaa2c *doc/PairwiseWholeGenomeAlignment.R
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5fe54fa153d8ed86ace9301a0b2b7d82 *doc/index.html
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144c4e621b5903d66fce90d40ff3452a *extdata/cne2wBf_cteIde1_danRer10_100_100
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8f357f770b042ed678b4f2b38e687053 *extdata/filter_regions.hg38.bed
83a080592fbc9a9e1e3c8045874bc4b6 *extdata/hg38.danRer10.net.axt
109773cc892befc7f16e64051a2f3180 *extdata/rmsk.fa
ecfff71e276939f8799b675c0035c131 *help/AnIndex
7019b401e3c6872a09ccea425d5789ed *help/CNEr.rdb
5f38f48e4844f32e41cf83dd7c99671b *help/CNEr.rdx
f6d43ed03e78af6c2ac26a9d043ed7cc *help/aliases.rds
5ff9720dc0d32b2c16cda25b3207a1cf *help/paths.rds
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889a2853e2acdadab9a32cbc8864c8fb *html/GRangePairs-class.html
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27cc15f790c7c418da9f492fba6cb65f *html/addAncestorGO.html
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4437d9899923bcbb3be6627b80cd7588 *html/axtChain.html
7241affd3769600034392903d0c99e0c *html/axtInfo.html
f56a2b9cba21e1d1e9d34834f8c1ffc1 *html/binner.html
1dab22b08d7618d3fd6250bfdf02db4d *html/blatCNE.html
19aa4026adc1dbe39d78fd21c4aedbbd *html/ceScan-methods.html
241cbc2990146acccb15ae48905e88f7 *html/chainMergeSort.html
2f368c6c3412188140a6effdd2ab510d *html/chainNetSyntenic.html
7ffc931123804f62aa71ff173c81a92a *html/chainPreNet.html
027a6ccca13a8979c1f10bb2951aa9a5 *html/cneFinalListDanRer10Hg38.html
0646df174944f208de639d85ecf53f3c *html/cneMerge.html
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77ee237cd6a0f251487658254e966902 *html/fixCoordinates.html
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5108f1e30395969959cc4540062d4ff8 *html/last.html
334d1b5bf9f27e74ce478713ac02e860 *html/lastz.html
2e76d24d2bba751573a7f2bf61e57a0e *html/lavToPsl.html
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8297099abe62f9e60fcc41508f336ca2 *html/makeAxtTracks.html
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f7245c02cc1c93b62c03792780a696e4 *html/makeGRBs.html
847631d399bfbedcb833e37520234158 *html/matchDistribution.html
100cbb2433d84d9c7db27aae641c0ec6 *html/netToAxt.html
f9d6bc4d6c18d2da3256f24383d0ad9f *html/orgKEGGIds2EntrezIDs.html
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800e27febb5ed318bda71ae7d917d671 *html/psubAxt.html
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4c713b89ed613480588b2ca9a7395513 *html/readAncora.html
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9a33d9322aabf3640bfe6b59c0b38720 *html/readAxt.html
8dabd8ec36a69aa1a205914f132c79d0 *html/readBed.html
ee5c7c6af965d22dc8290a9506175fce *html/readCNERangesFromSQLite.html
437e7a17978ba06bb8145782d9b65b31 *html/reverseCigar.html
759c8e059f0efc4fc2c6882c3e2d0330 *html/saveCNEToSQLite.html
bd139fc953e0728e19a32d5aef94d889 *html/scoringMatrix.html
b252c38d17d2ea050bcf53c13113cbb9 *html/subAxt-methods.html
8ac67a745c7fbf7882851b3c6a7f7050 *html/syntenicDotplot.html
5751102e0281eb2c62c6957fb0d149fc *html/writeAxt.html
ef92a0eefa41c5f39e6e269ea30474aa *libs/i386/CNEr.dll
354c59e11102c4df16c11f323e68b77b *libs/x64/CNEr.dll
ec85324af0f35f446e7f94ec7477fd3c *obsolete/CNEr.Rnw
6922454ebccccaa223412f1e90952a48 *obsolete/alignment.c
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
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b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
9e3c821c3f64ccfe466aa466d5f82ec5 *scripts/danRer10Pipeline.R
5f67d785a452ecc6f8168088a7b8b0c9 *scripts/prepareData.R
