queryCNEData {CNEr} | R Documentation

## Query the CNEData package to fetch the CNEs

### Description

Query the CNEData package to fetch the CNEs based on target, query species, winSize and identity.

### Usage

      queryCNEData(dbName, target, query, winSize, identity,
                   type=c("target", "all"))

### Arguments

`dbName` | The path of SQLite database.
`target, query` | The CNEs between target and query species.
`winSize, identity` | The thresholds of CNEs to fetch on identity over winSize.
`type` | Which set of CNEs are returned. When it is "all", the CNEs of target always on the left side of returned data.frame.

### Value

A data.frame of CNEs coordinates in chr, start, end.

### Author(s)

Ge Tan

[Package CNEr version 1.18.1 Index]