addAncestorGO {CNEr} | R Documentation

## Add ancestor GO IDs

### Description

Given a list of GO IDs, add the corresponding ancestor GO IDs.

### Usage

      addAncestorGO(go)

### Arguments

`go` | A `list` of GO IDs. The elements of the list can be empty.

### Details

The ancestor GO IDs for each GO ID are added to the elements.

### Value

A `list` of GO IDs with their ancestor GO IDs.

### Note

This function is mainly designed for processing the gff annotation generated from interproscan, where for each gene, a set of GO IDs are assigned. However, for GO enrichment analysis, we need a list of mapping from genes to the GO IDs and their ancestor GO IDs as well.

### Author(s)

Ge Tan

### Examples

        library(GO.db)
        go <- list(c("GO:0005215", "GO:0006810", "GO:0016020"), "GO:0016579")
        addAncestorGO(go)

[Package CNEr version 1.18.1 Index]