mod_summary {CEMiTool}R Documentation

Co-expression module summarization

Description

Summarizes modules using mean or eigengene expression.

Usage

mod_summary(cem, ...)

## S4 method for signature 'CEMiTool'
mod_summary(cem, method = c("mean", "median",
  "eigengene"), verbose = FALSE)

Arguments

cem

Object of class CEMiTool.

...

Optional parameters.

method

A character string indicating which summarization method is to be used. Can be 'eigengene', 'mean' or 'median'. Default is 'mean'.

verbose

Logical. If TRUE, reports analysis steps.

Value

A data.frame with summarized values.

Examples

# Get example CEMiTool object
data(cem)
# Summarize results
mod_summary <- mod_summary(cem)
[Package CEMiTool version 1.6.11 Index]