adaptSpillmat           Adapt spillover matrix
applyCutoffs            Single-cell debarcoding (2)
assignPrelim            Single-cell debarcoding (1)
cluster                 FlowSOM clustering & ConsensusClusterPlus
                        metaclustering
compCytof               Compensate CyTOF data
computeSpillmat         Compute spillover matrix
concatFCS               FCS file Concatenation
daFrame-class           Differential analysis frame class
data                    Example data sets
dbFrame-class           Debarcoding frame class
dbFrame-methods         Extraction and replacement methods for objects
                        of class 'dbFrame'
ei                      Extraction and replacement methods for objects
                        of class 'daFrame'
estCutoffs              Estimation of distance separation cutoffs
extractClusters         Extract clusters from a 'daFrame'
filter                  Filter daFrame
guessPanel              Guess parameter panel
launchGUI               Launch GUI
mergeClusters           Manual cluster merging
normCytof               Bead-based normalization
outFCS                  Write population-wise FCS files
outFrames               Population-wise 'flowFrame's from a 'dbFrame'
plotAbundances          Population frequencies across samples &
                        clusters
plotClusterExprs        Plot expression distributions by cluster
plotClusterHeatmap      Plot cluster heatmap
plotCodes               tSNE and PCA on SOM codes
plotCounts              Plot cell counts
plotDR                  Plot dim. reduction from a 'daFrame'
plotDiffHeatmap         Plot differential heatmap
plotEvents              Event plot
plotExprHeatmap         Plot expression heatmap
plotExprs               Plot expressions
plotMDS                 MDS plot
plotMahal               Biaxial plot
plotMedExprs            Plot median expressions
plotNRS                 Plot non-redundancy scores
plotSpillmat            Spillover matrix heat map
plotYields              Yield plot
runDR                   Perform dim. reduction on a 'daFrame'
