6fc2924f13f97825ce6e2921fe62b6e8 *CITATION
fdb90b12c13537b652ebf70111b4476f *DESCRIPTION
bd45fc3aec4743bd42949f7d5d483ad4 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
a015b6848fbd1d9450fe894709fc6a98 *Meta/Rd.rds
a566cc44fa612a3defb984d4888375f9 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
61f8c92993e946af23b2a594582ec24e *Meta/hsearch.rds
41ae549451d31ea4c92f2ff0a24042d5 *Meta/links.rds
b8ec6ae8827f0f3c855862c19b63e6e0 *Meta/nsInfo.rds
7f67243865eaed5d04fdaf750a3976d3 *Meta/package.rds
9c3b5f0d0da8fb4b5a0aeaeb8f2a171d *Meta/vignette.rds
76627abb2c21d3741ca0d04ec3f67e46 *NAMESPACE
9079b66ce079dbbb2914bdfca1b4fa04 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CAGEfightR
f511c0888d857ba2507f523c937ee4e0 *R/CAGEfightR.rdb
c225bec23813833eb3fa332725db30fe *R/CAGEfightR.rdx
193963eca5ef24ce28d3765cbc0b4e53 *data/Rdata.rdb
b0f01217827b5d9dcfd782b783168b62 *data/Rdata.rds
60a160ad2efc81f61ac3a92667314a7e *data/Rdata.rdx
3d835136ec57ae76d46590f1076e8154 *data/datalist
dd972c1c28cfae95660dd4f390ebd594 *doc/Introduction_to_CAGEfightR.R
2612121316b964d994ed7dd8b9f3ae21 *doc/Introduction_to_CAGEfightR.Rmd
ae48b9d7a57794aefde3099a19fbbb39 *doc/Introduction_to_CAGEfightR.html
3868bb4ec18148ed55d531bbe816e5e3 *doc/index.html
d1addb1b161c5d2d029a54dbf03aba45 *extdata/mm9.C547.minus.bw
12abbe7c0e853f44d353c3f819055f32 *extdata/mm9.C547.plus.bw
4c3a45077f5ecf6e93427c4800a0085d *extdata/mm9.C548.minus.bw
56befdc837745f8b2a5811e3ea94f8b0 *extdata/mm9.C548.plus.bw
246381ce67e76f4f772af9406fddd109 *extdata/mm9.C549.minus.bw
ac58aa74ba527e06166c70747ab63537 *extdata/mm9.C549.plus.bw
44c7a8ee9309507ee2612320a5dee4ff *help/AnIndex
4c33449609ad6052cc9e31d4db2f3940 *help/CAGEfightR.rdb
652e6ab327919ba77464ff111674a01d *help/CAGEfightR.rdx
2aefd57d2308da83e52f48c75ecf312e *help/aliases.rds
8c1365f1f5a3735d9055656bbe72d17f *help/paths.rds
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013a8bd29978282f36b20f5e821ade9a *html/assignGeneID.html
ebccd88e8adbe1e5a6a5166f9d30040e *html/assignMissingID.html
b4bdac4efdbd9196f01ef395912a313c *html/assignTxID.html
961e02576bfb35c623706e5898e08a3e *html/assignTxType.html
fa8f2c509e298fd06e4629f37ae73070 *html/balanceBC.html
6696c4b8fa7d2ce49da179a1f9f9ca86 *html/balanceD.html
8862bdd4ed261e0a80a0133c3a30212b *html/bwCommonGenome.html
c05484cb9bc2b09eb2a4edb685519b74 *html/bwGenomeCompatibility.html
74ff8d741fff3fa566cf0489817c1d9e *html/bwValid.html
c5d6584012fd25b97517d1b16130b971 *html/calcBidirectionality.html
9bc76dd382f56419a91cbac0fff57fea *html/calcComposition.html
6e3b0c05766c90db6f9eeb8d01e25c92 *html/calcPooled.html
6d0f13a1e7f500125453ccd7a01cf002 *html/calcShape.html
c0f86bbf3d76d60b47baa7cba1846d1a *html/calcSupport.html
b2b02cef7185bfdf914b16395a01060f *html/calcTPM.html
ad0351c19ffce4a6ec452b4b1c52ec6f *html/calcTotalTags.html
810305c26a7f241c24be8152c4a85772 *html/checkPeaked.html
4ef1107946aa68a5acbd00d57a3513d4 *html/checkPooled.html
b7ec7242ce44cb193f0cedd0a32e09d7 *html/clusterBidirectionally.html
7c23ed7c872213bff9ffb45b16b32faf *html/clusterUnidirectionally.html
965de68fd33502b91f4df50cf8a9bded *html/combineClusters.html
34f4b4fca4f3ea6304852afce406349f *html/exampleDesign.html
de1d46246161c3be84068799796a2d67 *html/findLinks.html
d8967551c53ad24c5a5433b7edd54020 *html/findStretches.html
25dcb8063ded45ae9cd24751712f2916 *html/quantifyCTSSs.html
b5cc4146948390f43d3a3f621496b681 *html/quantifyClusters.html
3a509bea06508f8c863bfebc1b16869f *html/quantifyGenes.html
013743e0dba889751750f92d1c388297 *html/quickEnhancers.html
329a2cdc36b53fdc745adb5dfde99f4b *html/quickTSSs.html
cf48d1c96e102f895f0242c83b327746 *html/shapeEntropy.html
8b311047fd10e4267612e4cc7e215cb1 *html/shapeIQR.html
bc015d7f1f5db5d2742cca96a0eb1173 *html/shapeMultimodality.html
559f5a0cf5635a9b6bc7089349e6002c *html/subsetByBidirectionality.html
8fc9be55727464ceb999ebc6d1e46e77 *html/subsetByComposition.html
34fc00bf6ec328fb98c4ae2186c22c13 *html/subsetBySupport.html
bcbdf218f123e6bacfd0337477946b6f *html/swapRanges.html
0b9fb9667ba3c677109619e3978913d0 *html/swapScores.html
8dcecdf0880bf2155f197c99ead47e7b *html/trackBalance.html
2fe24cf0fe0984e1b88c4be37bb1cc15 *html/trackCTSS.html
30230c7251c43a26f783e36d0e0beb2a *html/trackClusters.html
3b94146da6dd0f2a16194e822d4704ad *html/trackLinks.html
a6e17e7ed3a8f0c882524c8c72715609 *html/trimToPeak.html
c6b9f94e7108a24be997921f47c473c4 *html/trimToPercentiles.html
df24a68ffc17b92a4b64c71a84724708 *html/tuneTagClustering.html
