| biocPkgList {BiocPkgTools} | R Documentation |
The BiocViews-generated VIEWS file is available
for bioconductor release and devel repositories. It
contains quite a bit more information from the
package DESCRIPTION files than the PACKAGES
file. In particular, it contains biocViews annotations
and URLs for vignettes and developer URLs.
biocPkgList(version = BiocManager::version(), repo = "BioCsoft")
version |
The requested bioconductor version. Will
default to use the BiocManager defaults (ie., |
repo |
The requested biooconductor repository. The default will be the Bioconductor software repository: BioCsoft. Available repos include: "BioCsoft", "BioCann", "BioCexp", "BioCworkflows", and "CRAN". Note that not all repos are available for all versions, particularly older versions (but who would use those, right?). |
an object of class tbl_df.
# BiocManager::version() will retrieve the current version of
# Bioconductor (i.e "3.7")
bpkgl = biocPkgList(BiocManager::version())
bpkgl
unlist(bpkgl[1,'Depends'])
# Get a list of all packages that
# import "GEOquery"
library(dplyr)
bpkgl %>%
filter(Package=='GEOquery') %>%
pull(c('importsMe'))