getMonteCarloReplicate {ALDEx2}R Documentation

getMonteCarloReplicate

Description

Returns the designated Monte Carlo Dirochlet replicate generated from analysis, for an aldex.clr object.

Usage

getMonteCarloReplicate(.object,i)

Arguments

.object

A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.

i

The numeric index of the desired replicate.

Details

Returns the designated Monte Carlo Dirochlet replicate generated from analysis.

Value

A data frame representing the designated Monte Carlo Dirochlet replicate generated from analysis.

See Also

aldex.clr

Examples

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
monteCarloInstance <- getMonteCarloReplicate(x,1)
[Package ALDEx2 version 1.14.1 Index]