visHexBarplot {supraHex} | R Documentation

## Function to visualise codebook matrix using barplot for all hexagons or a specific one

### Description

`visHexBarplot` is supposed to visualise codebook matrix using barplot for all hexagons or a specific one

### Usage

    visHexBarplot(sObj, which.hexagon = NULL, which.hexagon.highlight =
    NULL,
    height = 7, margin = rep(0.1, 4), colormap = c("customized", "bwr",
    "jet", "gbr", "wyr", "br", "yr", "rainbow", "wb"), customized.color =
    "red",
    zeropattern.color = "gray", gp = grid::gpar(cex = 0.7, font = 1, col =
    "black"), bar.text.cex = 0.8, bar.text.srt = 90, newpage = TRUE)

### Arguments

`sObj` | an object of class "sMap" or "sTopol" or "sInit"
`which.hexagon` | the integer specifying which hexagon to display. If NULL, all hexagons will be visualised
`which.hexagon.highlight` | an integer vector specifying which hexagons are labelled. If NULL, all hexagons will be labelled
`height` | a numeric value specifying the height of device
`margin` | margins as units of length 4 or 1
`colormap` | short name for the predifined colormap, and "customized" for custom input (see the next 'customized.color'). The predifined colormap can be one of "jet" (jet colormap), "bwr" (blue-white-red colormap), "gbr" (green-black-red colormap), "wyr" (white-yellow-red colormap), "br" (black-red colormap), "yr" (yellow-red colormap), "wb" (white-black colormap), and "rainbow" (rainbow colormap, that is, red-yellow-green-cyan-blue-magenta). Alternatively, any hyphen-separated HTML color names, e.g. "blue-black-yellow", "royalblue-white-sandybrown", "darkgreen-white-darkviolet". A list of standard color names can be found in http://html-color-codes.info/color-names
`customized.color` | the customized color for pattern visualisation
`zeropattern.color` | the color for zero horizental line
`gp` | an object of class "gpar". It is the output from a call to the function "gpar" (i.e., a list of graphical parameter settings)
`bar.text.cex` | a numerical value giving the amount by which bar text should be magnified relative to the default (i.e., 1)
`bar.text.srt` | a numerical value giving the angle by which bar text should be orientated
`newpage` | logical to indicate whether to open a new page. By default, it sets to true for opening a new page

### Value

invisible

### Note

none

### See Also

`sPipeline`, `visColormap`

### Examples

    # 1) generate data with an iid matrix of 1000 x 9
    data <- cbind(matrix(rnorm(1000*3,mean=0,sd=1), nrow=1000, ncol=3),
    matrix(rnorm(1000*3,mean=0.5,sd=1), nrow=1000, ncol=3),
    matrix(rnorm(1000*3,mean=-0.5,sd=1), nrow=1000, ncol=3))
    colnames(data) <- c("S1","S1","S1","S2","S2","S2","S3","S3","S3")

    # 2) sMap resulted from using by default setup
    sMap <- sPipeline(data=data)

    # 3) plot codebook patterns using different types
    # 3a) for all hexagons
    visHexBarplot(sMap)
    # 3b) only for the first hexagon
    visHexBarplot(sMap, which.hexagon=1)

[Package supraHex version 1.18.0 Index]