readMiRBaseMatureAnnotation {srnadiff}R Documentation

Segmentation using an miRBase annotation file and use mature miRNAs.

Description

Segmentation using an miRBase annotation file and use mature miRNAs.

Usage

readMiRBaseMatureAnnotation(fileName)

Arguments

fileName

The annotation file name in GFF/GTF format.

Value

A GRanges.

Examples

dir        <- system.file("extdata", package="srnadiff", mustWork = TRUE)
gffFile    <- file.path(dir, "mirbase21_GRCh38.gff3")
annotation <- readMiRBaseMatureAnnotation(gffFile)
[Package srnadiff version 1.0.0 Index]