annotatePTC	annotatePTC.R
CDSSet	CDSSet
CDSSet-class	CDSSet
conditions	conditions
dim.SpliceRList	dim
exons	tools
generateGTF	generateGTF
getCDS	getCDS
length.SpliceRList	dim
prepareCuff	prepareCuff
prepareCuffExample	prepareCuffExample
preSpliceRFilter	preSpliceRFilter
spliceR	spliceR
SpliceRList	SpliceRList
SpliceRList-class	SpliceRList
spliceRPlot	spliceRPlot
topIsoShift	topIsoShift
totalNumberOfAS	totalNumberOfAS
transcripts	tools
