signet: Selection Inference in Gene NETworks

Documentation for package ‘signet’ version 1.0.2

.Signet	An S4 class to represent a pathway and the results of the associated simulated annealing run.
.SignetList	An S4 class to represent a list of "Signet" objects.
initialize-method	An S4 class to represent a pathway and the results of the associated simulated annealing run.
initialize-method	An S4 class to represent a list of "Signet" objects.
kegg_human	Pathway examples. See 'browseVignettes("signet")' to see how to prepare the pathways for running simulated annealing.
nullDist	Null distribution
plot-method	An S4 class to represent a pathway and the results of the associated simulated annealing run.
scores	Example of gene selection scores.
searchSubnet	Search for a high scoring subnetwork
show-method	An S4 class to represent a pathway and the results of the associated simulated annealing run.
signet	Selection Inference in Gene NETworks
Signet-class	An S4 class to represent a pathway and the results of the associated simulated annealing run.
SignetList-class	An S4 class to represent a list of "Signet" objects.
summary-method	An S4 class to represent a pathway and the results of the associated simulated annealing run.
summary-method	An S4 class to represent a list of "Signet" objects.
testSubnet	Test the significance of high-scoring subnetworks found using simulated annealing.
writeXGMML	Write Cytoscape input file
[-method	An S4 class to represent a list of "Signet" objects.
[[	An S4 class to represent a list of "Signet" objects.
[[-method	An S4 class to represent a list of "Signet" objects.