R: Run the interactive shinyMethyl session

runShinyMethyl {shinyMethyl}

R Documentation

Run the interactive shinyMethyl session

Description

Function to run the interactive shinyMethyl session from a shinyMethylSet.

Usage

runShinyMethyl(shinyMethylSet1, shinyMethylSet2 = NULL)

Arguments

`shinyMethylSet1`	`shinyMethylSet` that must be extracted from an `RGChannelSet`
`shinyMethylSet2`	optional `shinyMethylSet` that must be extracted from an `GenomicRatioSet`

Value

No value returned. Instead the shinyMethyl interactive session is launched.

Author(s)

Jean-Philippe Fortin

Examples

## Not run: 
if (require(minfiData)){
  baseDir <- system.file("extdata", package = "minfiData")
  targets <- read.450k.sheet(baseDir)
  targets$Sample_Plate <- substr(targets$Slide,1,7)
  RGSet <- read.450k.exp(base = baseDir, targets = targets)

  summarized.data <- shinySummarize(RGSet)
  runShinyMethyl(summarized.data)
}

## End(Not run)

[Package shinyMethyl version 1.16.0 Index]