R: Test tools with cwl-runner

test_tool_cwlrun {sevenbridges}

R Documentation

Test tools with cwl-runner

Description

Test tools locally cwl-runner (https://github.com/common-workflow-language/cwltool)

Usage

test_tool_cwlrun(rabix_tool, inputs = list())

Arguments

`rabix_tool`	rabix tool from Tool class
`inputs`	input parameters declared as json (or yaml) string

Value

cwl-runner stdout

Examples

## Not run: 
inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}'
rbx <- <define rabix tool>
set_test_env("tengfei/testenv", "<mount_dir>")
test_tool_cwlrun(rbx, inputs)

## End(Not run)

[Package sevenbridges version 1.10.5 Index]