| parseLoopsRao {sevenC} | R Documentation |
GInteractions.Parse chromatin loops from Rao et al. 2014 as strict
GInteractions.
parseLoopsRao(inFile, ...)
inFile |
input file with loops |
... |
additional arguments, that will be passed to
|
GInteractions with loops from input file.
# use example loop file
exampleLoopFile <- system.file("extdata",
"GM12878_HiCCUPS.chr22_1-30000000.loop.txt", package = "sevenC")
# read loops form example file:
gi <- parseLoopsRao(exampleLoopFile)
# read loops with custom seqinfo object:
customSeqInfo <- Seqinfo(seqnames = c("chr1", "chr22"),
seqlengths = c(10^8, 10^8), isCircular = c(FALSE, FALSE),
genome = "custom")
gi <- parseLoopsRao(exampleLoopFile, seqinfo = customSeqInfo)