b456b10023da34defcfc78e968764ae3 *DESCRIPTION
900680b0d4cbc3e877c83f0c40825892 *INDEX
ce8022fb0811638ebf47e6e93d039887 *Meta/Rd.rds
c0ac4380c0636c7a700217c81987d5d6 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
9d025613330c34aa3f4b8c13922b8eb0 *Meta/hsearch.rds
50ba56736b8ee3bef69c19dba97559e9 *Meta/links.rds
eb33dcfb03fd5d7b38c59954d7530e7f *Meta/nsInfo.rds
7e044714dd84c300b055c832bc9bb352 *Meta/package.rds
f0b02618458a325ff269e639d3dd49cb *Meta/vignette.rds
745a248d66abbd2455d3fbd851723b27 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/segmentSeq
2a39f4e1b0f982b3d250fb38e058557f *R/segmentSeq.rdb
0737917432df55ad40ad75ed9184280f *R/segmentSeq.rdx
e0fdeb3e6f073566bf1115a64d7ebeda *data/hSL.RData
aa64b9983d25a48733870ed50d1b6b77 *doc/index.html
d037b0c1b2d21c9eec6e002c676d2e9c *doc/methylationAnalysis.R
520ef4986fae457306d557879ddad94a *doc/methylationAnalysis.Rnw
b1e6d958962e05e5512938de52147d7c *doc/methylationAnalysis.pdf
2177f37f8db17c1eaa5773248b58431d *doc/segmentSeq.R
dc3e5ea6060691ece51c17a273a3b0b5 *doc/segmentSeq.Rnw
1cf3760f78dd44c2c5224bc9d2108201 *doc/segmentSeq.pdf
3e06d773f7fc796b9f8abfbd87859c91 *extdata/SL10.txt
d4614b7e3a4b1d43982ddfb5756b3c55 *extdata/SL26.txt
b743c46dcbdbebc79f25c8402c664099 *extdata/SL32.txt
557c9c052a14cbeb5794a5d40520ee98 *extdata/SL9.txt
f9e97daa13b3f4e7b2554cfc838e20b6 *extdata/short_13_C24_col_trim.fastq_CG_methCalls.gz
6202ab9dfdfca80c02a65f4e6bb528fa *extdata/short_18B_C24_C24_trim.fastq_CG_methCalls.gz
67b74bf8edfa841d34a31dfd467c8c3f *extdata/short_Sample_17A_trimmed.fastq_CG_methCalls.gz
87ff08b3a90565b2d8b826373e30dc0e *extdata/short_Sample_28_trimmed.fastq_CG_methCalls.gz
980b344cf620586acacd236f46a7a13c *help/AnIndex
93e32cc155f415b0654913ae70a5aeb4 *help/aliases.rds
6473788c01a4f9eaba43bedcb6b432ae *help/paths.rds
8778280810db2334b9f2a4d92764b46c *help/segmentSeq.rdb
d29b7cacc7851d2f76e21fe8b25d414f *help/segmentSeq.rdx
434469f8e529c5edecf2054b387b45a0 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4d96355b8960809ac041bf6dfae505b6 *html/SL.html
e031e6a9736127ae6d75f6cae7431407 *html/alignmentClass-class.html
433fd1ffc0cacbf9b8d0a765847a35da *html/alignmentData-class.html
abd711488b3de50b4af9fc5be424d499 *html/alignmentMeth-class.html
912d3a9f0c9fa77f76d7ab66efcf8732 *html/averageMethylationRegions.html
6b2c9dc59a400d824db6a65acf31b5f0 *html/classifySeg.html
9485d9e29d7b999a3844cdbe7ba2d597 *html/findChunks.html
c6e8ad73753eaaad9b91fb32ac5804ed *html/getCounts.html
a43210ee449da648e788a06716c0cefa *html/getOverlaps.html
2080e44ec21bbaa553cdbacc280f7efb *html/givenExpression.html
2137b1d715d92d22666b9736c5aee7fe *html/hSL.html
4f8f39bfd91a7bbabaaefe7a78b0a009 *html/heuristicSeg.html
a2f797bb957d1c923e0c60425957da2c *html/lociData-class.html
3c3d76ec5bfc47e4a1ee790217e8b84f *html/lociLikelihoods.html
378432937682e092cddb5e030f9ea6c7 *html/mergeMethSegs.html
ce8dae60ffee22d8c89047fb4745bc07 *html/methData-class.html
0b06bda40297e24524c6c3b526abc05b *html/normaliseNC.html
29319becd1f9ccc3eaeb111dad6e1da1 *html/plotGenome.html
eb6014a3593f4cf941b6e8bccaa2b40a *html/plotMeth.html
f13a3231405a4ce0609a688457139608 *html/plotMethDistribution.html
17ffa10ca3164d445bb824fdfbe4003a *html/processAD.html
9b5290d843b1c3d7dcec6cb2c1d598a0 *html/readMethods.html
172633d49a4f8989f2203f11132a484e *html/readMeths.html
7c5427855d428667778e8e7a771dc1cb *html/segClass-class.html
bb456f234f7edb73edecd25de1603564 *html/segData-class.html
1f69ffdc6b13a2e2afe6583a27d27e3b *html/segMeth-class.html
03f4433f08ce08336c184e3784bd437d *html/segmentSeq-package.html
7cc5c779b83c4da0c0f84883fb50ccf0 *html/selectLoci.html
d486d8fd8b277e6128e9a782f22e70d3 *html/summariseLoci.html
60a62923b697b88c2ed168611b16310a *html/thresholdFinder.html
