scater GUI function

Description

scater shiny app GUI for workflow for less programmatically inclined users or those who would like a quick and easy way to view multiple plots.

Usage

scater_gui(object)

Arguments

Value

Opens a browser window with an interactive shiny app and visualize all possible plots included in the scater

Author(s)

Davis McCarthy and Vladimir Kiselev

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sce <- SingleCellExperiment(
assays = list(counts = sc_example_counts), colData = sc_example_cell_info)
example_sce <- normalize(example_sce)
drop_genes <- apply(exprs(example_sce), 1, function(x) {var(x) == 0})
example_sce <- example_sce[!drop_genes, ]
example_sce <- calculateQCMetrics(example_sce, 
feature_controls = list(set1 = 1:40))
## Not run: 
scater_gui(example_sce)

## End(Not run)