QC_metrics {scPipe} | R Documentation

## Get or set quality control metrics in a SingleCellExperiment object

### Description

Get or set quality control metrics in a SingleCellExperiment object

### Usage

    QC_metrics(object)

    QC_metrics(object) <- value

    QC_metrics.sce(object)

    ## S4 method for signature 'SingleCellExperiment'
    QC_metrics(object)

    ## S4 replacement method for signature 'SingleCellExperiment'
    QC_metrics(object) <- value

### Arguments

`object` | A `SingleCellExperiment` object.
`value` | Value to be assigned to corresponding object.

### Value

a dataframe of quality control matrics

A DataFrame of quality control metrics.

### Author(s)

Luyi Tian

### Examples

    data("sc_sample_data")
    data("sc_sample_qc")
    sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
    QC_metrics(sce) = sc_sample_qc

    head(QC_metrics(sce))

[Package scPipe version 1.2.1 Index]