se100k {restfulSE} | R Documentation

## Convenience functions using EC2 server to extract tenx neurons full or subset data

### Description

Convenience functions using EC2 server to extract tenx neurons full or subset data

### Usage

    se100k(url = "http://h5s.channingremotedata.org:5000",
      tag = "tenx_100k_sorted")

    se1.3M(url = "http://h5s.channingremotedata.org:5000", tag = "tenx_full")

### Arguments

`url` | server URL
`tag` | string giving the internal dataset name

### Value

RESTfulSummarizedExperiment

SummarizedExperiment instance

### Note

se1.3M provides access to the full 1.3 million neurons with features in their order as given in the original HDF5 while se100k provides access to only 100k neurons with expression features sorted by genomic location

### Examples

    ss = se100k()
    # get a set of genes from Tasic et al. 2016 Nature Neuroscience
    tc = tasicCortex()
    adultCort = tc$GENEID
    # subset
    csums = apply(assay(ss[adultCort,1:500]),1,sum)
    names(csums) = tc$SYMBOL
    csums

[Package restfulSE version 1.2.3 Index]