c994a3af0c495c3298d62aa36c773571 *DESCRIPTION
b57f1f87aaa983fa238ab1a4c1216bf7 *INDEX
84e65aa6be123525ac0640c131d4b7c4 *Meta/Rd.rds
56489b9825a953672345989c3be46472 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
d989790ab2dfcb60dfe1e90e06b73e5e *Meta/hsearch.rds
61e1cf5469347a44c90fa3a9c44b9b98 *Meta/links.rds
4b6e4186a841c116f2b44dd312c03707 *Meta/nsInfo.rds
d98ca0fcab4b3555c4ee3d3df80fa3e8 *Meta/package.rds
b2aafabe6ced42d94d2a426eff296bcf *NAMESPACE
594c0d4f02b79551b089be17d3c83296 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/pwOmics
9b31d617f279246ebbab34d5149b6ce1 *R/pwOmics.rdb
31f297e3cf368053507e3d2c2ce21e2b *R/pwOmics.rdx
62f1951990e4a48b8e9576a63de2a20d *data/OmicsExampleData.RData
0173a6340a384e4863487ec72a92f25c *extdata/Genelists/Genelist_biocarta.RData
8ce73f94923b113e1b37341189cc1fa5 *extdata/Genelists/Genelist_kegg.RData
3966ca5db8518cdf31378969a73c53e7 *extdata/Genelists/Genelist_nci.RData
9f57a879f9965936a1ae43478a963a13 *extdata/Genelists/Genelist_reactome.RData
8212a0c9e1ddcbd8edbc9037b606eca5 *extdata/TF_targets.txt
98b206046ac2e5a7723f5b450b628003 *extdata/chea-background.csv
e179e6d1de61e0f377aef5c587e79401 *extdata/mat_phospho.csv
cbff0dfb526df4226b5903b7443c06f6 *extdata/phospho_anno.txt
1bfd415c150f248004e280346bdcd2fc *extdata/phospho_reg_table.txt
52bfb1275c60a7e2e3b2bbbb1bb348fd *extdata/transcriptome_signif.txt
c0a168a7153f25de41757b7fd6b64472 *help/AnIndex
a2480b0a5a14ec020cf7ac150ca4a1ee *help/aliases.rds
3f117be834d8c25465d777d5682d411c *help/paths.rds
aeb62aaa6255408f03d90413a1c5c2bb *help/pwOmics.rdb
c7cdd5bef8d869f40f2607321dd81422 *help/pwOmics.rdx
2a559f48a42216b889b98d0a3e28aae6 *html/00Index.html
d22c30366cf401d7d813caa7a43af1b6 *html/OmicsExampleData.html
9e3f489b5b8847c6fb628902899b2743 *html/PWidentallprots.html
4be4cbbfdef6ad220b8540338beb0c0c *html/PWidentallprotssub.html
e2163a9f3479439f64d0033b8dba040b *html/PWidenttps.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
100148bbb5b8045f7c11812ebfdff854 *html/SteinerTree_cons.html
2f967a2db574f2c222d6c513989e3307 *html/TFidentallgenes.html
1b2efe93f19ebbce2306b93df4cf8c0d *html/TFidenttps.html
b45d2244967a4a9646920a9f13eaa287 *html/addFeedbackLoops.html
453765d65fb0d1ac8191025707b5783d *html/clusterTimeProfiles.html
63bf25df9aa2bde53f3f7457de332111 *html/consDynamicNet.html
f335f376ad08052d47fae786e3ebac4c *html/createBiopaxnew.html
2870ada09fe6e797d3919d5a67c6b41a *html/createIntIDs.html
43f094bb7f7826a68469e2546552332d *html/findSignalingAxes.html
6a80c6e9fa2d1feb56f5ad6f8b4f5889 *html/findxneighborsoverlap.html
adb6aef3da5e42d36dc686650f1360cb *html/findxnextneighbors.html
b1ddbae3815df82bf2fc6e7267ab6cd2 *html/genGenelists.html
df3d5478c1f36be63e94426b590ebedd *html/genGenelistssub.html
dd60350f42b3ac08b528f6afc994ce0c *html/genIntIDs.html
089146b39c19d6d77eb3ea207a9afad6 *html/generate_DSSignalingBase.html
b9d0503f47e9d23a8241011e90c0874b *html/genfullConsensusGraph.html
452e401181935d19b2144c7c6dbe9f2b *html/getAlias_Ensemble.html
8ade85e5e1b9efe7eaf744fc0cdb726b *html/getAliasfromSTRINGIDs.html
ed29537a354fe32e415a7e78deff75dd *html/getBiopaxModel.html
68831db61ba9d16c93921a679cdda1b6 *html/getConsensusSTRINGIDs.html
44867181c26d3fb7f1a8288fbb95ba44 *html/getDS_PWs.html
02c75fb8020ecc80cc35118470afdfc8 *html/getDS_TFs.html
ab3597eeaa77ff5f23fee53534db647d *html/getDS_TGs.html
748fff2c7022a2cdf1904d61564962de *html/getFCsplines.html
4c27234cb05839314bf2d23849223368 *html/getGenesIntersection.html
40a8f96ff143d0f56d294e64427080f0 *html/getOmicsDataset.html
1fad121dd3cc86cb870559e68f70a1a1 *html/getOmicsTimepoints.html
bb21be1744b66d5df1df397536b042da *html/getOmicsallGeneIDs.html
0aab2011b860dcdc560ad3f50169011d *html/getOmicsallProteinIDs.html
2d0af01b2b55011534f69af6acb56da2 *html/getProteinIntersection.html
30d1348062e8c8414f8461f9210771f0 *html/getSTRING_graph.html
a04878b09fc3121e77cd0a8ef00bdd75 *html/getTFIntersection.html
cd12ee487552a7d58c6d4d95c9b79a78 *html/getUS_PWs.html
5c3dbc901f95884428cf50d94022b795 *html/getUS_TFs.html
4add50bf2f058f66df42e421323f164b *html/getUS_regulators.html
872f15ebb8578e7f9685ef17259d758a *html/get_matching_transcripts.html
f41217d2c3c775ed7e0c677c9dade400 *html/getbipartitegraphInfo.html
c4daacf0cb18fd9e1b1f753184428827 *html/gettpIntersection.html
964a2366c259a5238c77fdce4650fe46 *html/identPWsofTFs.html
3f61c6b380f5d1d42181307c953a8055 *html/identRegulators.html
18d131abf052e618f2d9ee6cb186ebf0 *html/identTFTGsinPWs.html
63b47822f70685f9f4dbf0199831f5d6 *html/identTFs.html
7ca5af1a4f6f4adee129df1d96091567 *html/identifyPR.html
c757ce65a43495840a8a60e83272d3b5 *html/identifyPWTFTGs.html
e5742a020bc96db434b3b652197e9979 *html/identifyPWs.html
898ec889fa112ffe2500d93001d91691 *html/identifyRsofTFs.html
e078d40781fff0c3ea7b5643b22a29eb *html/identifyTFs.html
12bf1ac4372dbd470dc818a639052ce9 *html/infoConsensusGraph.html
3e748a90374e0ef1bac98ce339a978df *html/loadGenelists.html
5ffb998971462adb4fa8b3156deea43f *html/loadPWs.html
8a94e8594eed815a0ac199ea2f7b2c3d *html/plotConsDynNet.html
894b10a276333f686a4db69e20149c5f *html/plotConsensusGraph.html
4c843ef12229f479471294df346814f9 *html/plotConsensusProfiles.html
ebcd3f0f4d560b354e8c6f9ea85a3f19 *html/plotTimeProfileClusters.html
6285182643ad086449f8538558ae7c90 *html/predictFCvals.html
9bb4e76a645df501efceb350efff4dc7 *html/preparePWinfo.html
f7d72ae8281fb5558bd6f6201eda9ba3 *html/print.OmicsData.html
8958c8094015bbc230aabf79733c61de *html/pwIntOmics-package.html
b208259f9f9624e4799daa8c5703f9a4 *html/readOmics.html
beafded31f45725f860c611040b3e9e3 *html/readPWdata.html
83d12674b505c630dc36f6e19a92a096 *html/readPhosphodata.html
8de5922353b05aa915c94852cc59bf38 *html/readTFdata.html
e823f960387af6bbfd2ebec613b2b935 *html/readTFtargets.html
ace3fb11a04dc99deb35a94ae1bdc61b *html/selectPWsofTFs.html
a2019e02e8f60eb0922b549aec42aa2e *html/staticConsensusNet.html
79f3951c30b3956c2bc8744d8568b81f *html/temp_correlations.html
122cc06fcca219f21a1377b9d567c51e *unitTests/provided_TF_genes.txt
ecdaa851b286ef5c57d39631fabf5bcb *unitTests/pwIntOmics_exported.R
fe0a87544ccf51eb8843918e086046c7 *unitTests/pwIntOmics_internal.R
